Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   R6Y88_RS07945 Genome accession   NZ_CP137687
Coordinates   1580762..1581403 (-) Length   213 a.a.
NCBI ID   WP_015382876.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1575762..1586403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS07930 ydfK 1576271..1576960 (+) 690 WP_015382879.1 DUF554 domain-containing protein -
  R6Y88_RS07935 cesA 1577163..1578065 (+) 903 WP_015482865.1 carboxylesterase -
  R6Y88_RS07940 pleJ 1578478..1580649 (-) 2172 WP_015482864.1 MMPL family transporter -
  R6Y88_RS07945 vraR 1580762..1581403 (-) 642 WP_015382876.1 two-component system response regulator YdfI Regulator
  R6Y88_RS07950 ydfH 1581396..1582619 (-) 1224 WP_015482863.1 sensor histidine kinase -
  R6Y88_RS07955 - 1582862..1583011 (+) 150 WP_015382874.1 hypothetical protein -
  R6Y88_RS07960 - 1583008..1583187 (+) 180 WP_080030634.1 hypothetical protein -
  R6Y88_RS07965 ydfG 1583273..1583716 (+) 444 WP_015482861.1 carboxymuconolactone decarboxylase family protein -
  R6Y88_RS07970 ydfF 1583796..1584476 (-) 681 WP_015482860.1 helix-turn-helix transcriptional regulator -
  R6Y88_RS07975 ydfE 1584566..1585189 (+) 624 WP_015482859.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23946.90 Da        Isoelectric Point: 5.4183

>NTDB_id=822780 R6Y88_RS07945 WP_015382876.1 1580762..1581403(-) (vraR) [Bacillus subtilis strain YT-4]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=822780 R6Y88_RS07945 WP_015382876.1 1580762..1581403(-) (vraR) [Bacillus subtilis strain YT-4]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAGTTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCTATCAGAGGTAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTTCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACAGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGGCGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371