Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   R6Y88_RS07175 Genome accession   NZ_CP137687
Coordinates   1423629..1424759 (-) Length   376 a.a.
NCBI ID   WP_015482914.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1418629..1429759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS07130 cotJC 1418695..1419264 (-) 570 WP_003233850.1 spore coat protein CotJC -
  R6Y88_RS07135 cotJB 1419279..1419542 (-) 264 WP_003219491.1 spore coat protein CotJB -
  R6Y88_RS07140 cotJA 1419526..1419774 (-) 249 WP_003219489.1 spore coat-associated protein CotJA -
  R6Y88_RS07145 yesF 1419901..1420766 (-) 866 Protein_1405 SDR family oxidoreductase -
  R6Y88_RS07150 yesE 1420763..1421209 (-) 447 WP_015383031.1 nuclear transport factor 2 family protein -
  R6Y88_RS07155 yezE 1421288..1421872 (-) 585 WP_015482917.1 TetR/AcrR family transcriptional regulator -
  R6Y88_RS07160 yeeK 1421986..1422453 (-) 468 WP_015482916.1 spore coat protein YeeK -
  R6Y88_RS07165 yeeI 1422587..1423306 (-) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R6Y88_RS07170 phrH 1423466..1423639 (-) 174 WP_015482915.1 phosphatase RapH inhibitor PhrH -
  R6Y88_RS07175 rapC 1423629..1424759 (-) 1131 WP_015482914.1 response regulator aspartate phosphatase RapH Regulator
  R6Y88_RS07180 - 1424905..1426065 (-) 1161 WP_015482913.1 lysozyme inhibitor LprI family protein -
  R6Y88_RS07185 - 1426221..1427141 (-) 921 WP_015383026.1 DUF5655 domain-containing protein -
  R6Y88_RS07190 - 1427154..1427492 (-) 339 WP_015482912.1 hypothetical protein -
  R6Y88_RS07195 yeeF 1427659..1429668 (+) 2010 WP_015482911.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43884.14 Da        Isoelectric Point: 5.8846

>NTDB_id=822778 R6Y88_RS07175 WP_015482914.1 1423629..1424759(-) (rapC) [Bacillus subtilis strain YT-4]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLETIENPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPVVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HVLQALDIYQNNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=822778 R6Y88_RS07175 WP_015482914.1 1423629..1424759(-) (rapC) [Bacillus subtilis strain YT-4]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGAACCCGCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGGTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATGTTCTTCAAGCCTTGGACATTTATCAAAACAATCCCCTATACAGCATTAGAACCATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTTTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGGTTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGACGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCGTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTGTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.16

100

0.402
  rapF Bacillus subtilis subsp. subtilis str. 168

39.523

100

0.396