Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   R6Y88_RS05540 Genome accession   NZ_CP137687
Coordinates   1113792..1116683 (-) Length   963 a.a.
NCBI ID   WP_080341616.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1108792..1121683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS05495 scoC 1109043..1109654 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  R6Y88_RS05500 yhaI 1109651..1109992 (-) 342 WP_009966921.1 YhaI family protein -
  R6Y88_RS05505 yhaJ 1110200..1110718 (+) 519 WP_015483028.1 DUF3267 domain-containing protein -
  R6Y88_RS05510 - 1110826..1111008 (+) 183 WP_024571667.1 hypothetical protein -
  R6Y88_RS05515 yhzE2 1111061..1111147 (-) 87 WP_003155248.1 sporulation protein YhzE2 -
  R6Y88_RS05520 yhzE1 1111272..1111358 (-) 87 WP_003327753.1 sporulation protein YhzE1 -
  R6Y88_RS05525 prsA 1111518..1112396 (+) 879 WP_015383240.1 peptidylprolyl isomerase PrsA -
  R6Y88_RS05530 yhaL 1112437..1112649 (-) 213 WP_003233252.1 sporulation protein YhaL -
  R6Y88_RS05535 yhaM 1112774..1113718 (-) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  R6Y88_RS05540 sbcE 1113792..1116683 (-) 2892 WP_080341616.1 DNA repair/recombination ATPase SbcE Machinery gene
  R6Y88_RS05545 yhaO 1116688..1117914 (-) 1227 WP_015383238.1 exonuclease SbcCD subunit D -
  R6Y88_RS05550 yhaP 1118021..1119280 (-) 1260 WP_015383237.1 ABC transporter permease -
  R6Y88_RS05555 yhaQ 1119273..1120169 (-) 897 WP_015383236.1 ABC transporter ATP-binding protein -
  R6Y88_RS05560 yhzD 1120296..1120481 (+) 186 WP_003233264.1 YhzD family protein -
  R6Y88_RS05565 yhaR 1120502..1121269 (-) 768 WP_015483023.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111229.40 Da        Isoelectric Point: 6.5217

>NTDB_id=822771 R6Y88_RS05540 WP_080341616.1 1113792..1116683(-) (sbcE) [Bacillus subtilis strain YT-4]
MTALRIISLHIYQYGKFSNRTFRFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGKAEKLSVYTEKGEVKQGDVIKQLFQGTDRSLYKAIYSFDVFGLQEVHAFNRDKIGEFLLFSSLFGAEAVSK
LDTRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAEIELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAECQEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQASAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARHELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQTKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKPSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMNELGFKEDPSFLLEAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKEQMLELEQEIQYFHAQIKQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGGHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGLVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHSSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=822771 R6Y88_RS05540 WP_080341616.1 1113792..1116683(-) (sbcE) [Bacillus subtilis strain YT-4]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATACGGAAAATTTTCTAATCGGACCTTTCGCTTTTCCGCCTC
TCCTGTCCAAGTCATCTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGCATGCTGTTCGGTT
TTCCGAAAACGAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGTGGTGTTCTTGAAGCTGAACATCCTGAGTATGGG
GTGCTGAAGATCGAACGGACGAAAGGGAAAGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTATAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTCGACGTATTCGGGCTGCAGG
AAGTTCACGCCTTTAATCGGGACAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATACAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTGAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAATCGAATTGAAAGAGACGGCAGGACATATCCGAATGATTGAGGGGGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTAATTGCAGAATGTCAGGAACATGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGGCGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCATGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAACGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCTGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTATCAGGAAAACCGTCTTCTCG
AAACAGCCGAGAGACAAGACAACCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAGGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAATGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGAGGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACAGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATCA
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGGGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGATTGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTAAAAGAAACGGCTAAAAAATGGGCCTCGATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTCTTCCGCCCTCTGACTGACGGTAACT
ACCAAACCATTTATTTTTCCGAAACGGATGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CCGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAGCAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

98.027

100

0.98