Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R6Y88_RS05465 Genome accession   NZ_CP137687
Coordinates   1104578..1105321 (-) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain YT-4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099578..1110321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS05445 - 1099957..1101348 (+) 1392 WP_015383248.1 hypothetical protein -
  R6Y88_RS05450 sndC 1101421..1102611 (+) 1191 WP_015383247.1 N-acetyl amino acid acetylase SndC -
  R6Y88_RS05455 ecsC 1102629..1103339 (-) 711 WP_015383246.1 EcsC family protein -
  R6Y88_RS05460 ecsB 1103359..1104585 (-) 1227 WP_015483030.1 ABC transporter permease EcsB -
  R6Y88_RS05465 pptA 1104578..1105321 (-) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  R6Y88_RS05470 hinT 1105809..1106246 (+) 438 WP_003233231.1 HIT family protein -
  R6Y88_RS05475 serC 1106393..1107472 (+) 1080 WP_015383244.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  R6Y88_RS05480 trpP 1107597..1108115 (+) 519 WP_015383243.1 tryptophan transporter TrpP -
  R6Y88_RS05485 - 1108189..1108380 (-) 192 WP_014476318.1 hypothetical protein -
  R6Y88_RS05490 yhaH 1108509..1108865 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  R6Y88_RS05495 scoC 1109043..1109654 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  R6Y88_RS05500 yhaI 1109651..1109992 (-) 342 WP_009966921.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=822770 R6Y88_RS05465 WP_003233230.1 1104578..1105321(-) (pptA) [Bacillus subtilis strain YT-4]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=822770 R6Y88_RS05465 WP_003233230.1 1104578..1105321(-) (pptA) [Bacillus subtilis strain YT-4]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547