Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   R6Y88_RS01830 Genome accession   NZ_CP137687
Coordinates   413529..413960 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain YT-4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 408529..418960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS01820 hexA 410013..412589 (-) 2577 WP_015483239.1 DNA mismatch repair protein MutS Machinery gene
  R6Y88_RS01825 cotE 412722..413267 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  R6Y88_RS01830 ymcA 413529..413960 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  R6Y88_RS01835 miaB 413962..415491 (-) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  R6Y88_RS01840 kbl 415639..416817 (-) 1179 WP_015383694.1 glycine C-acetyltransferase -
  R6Y88_RS01845 tdh 416830..417873 (-) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  R6Y88_RS01850 spoVS 418138..418398 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=822732 R6Y88_RS01830 WP_003231834.1 413529..413960(-) (ymcA) [Bacillus subtilis strain YT-4]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=822732 R6Y88_RS01830 WP_003231834.1 413529..413960(-) (ymcA) [Bacillus subtilis strain YT-4]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1