Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   R6U80_RS11065 Genome accession   NZ_CP137623
Coordinates   2247486..2248256 (-) Length   256 a.a.
NCBI ID   WP_058220688.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2242486..2253256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS11040 (R6U80_11040) - 2243511..2243918 (+) 408 WP_270219650.1 hypothetical protein -
  R6U80_RS11045 (R6U80_11045) - 2244019..2244324 (+) 306 WP_058223010.1 bacteriocin immunity protein -
  R6U80_RS11050 (R6U80_11050) - 2244415..2245596 (+) 1182 WP_058223011.1 site-specific integrase -
  R6U80_RS11055 (R6U80_11055) - 2245809..2246435 (+) 627 WP_058220686.1 copper homeostasis protein CutC -
  R6U80_RS11060 (R6U80_11060) - 2246474..2247493 (-) 1020 WP_058220687.1 ABC transporter permease -
  R6U80_RS11065 (R6U80_11065) pptA 2247486..2248256 (-) 771 WP_058220688.1 ABC transporter ATP-binding protein Regulator
  R6U80_RS11070 (R6U80_11070) - 2248275..2250080 (-) 1806 WP_313791900.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  R6U80_RS11075 (R6U80_11075) - 2250359..2250760 (+) 402 WP_058203740.1 HIT family protein -
  R6U80_RS11080 (R6U80_11080) - 2250773..2250994 (+) 222 WP_010906257.1 hypothetical protein -
  R6U80_RS11085 (R6U80_11085) - 2251006..2251350 (-) 345 WP_004254648.1 hypothetical protein -
  R6U80_RS11090 (R6U80_11090) rplA 2251429..2252118 (-) 690 WP_004254644.1 50S ribosomal protein L1 -
  R6U80_RS11095 (R6U80_11095) rplK 2252456..2252881 (-) 426 WP_004254643.1 50S ribosomal protein L11 -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28473.93 Da        Isoelectric Point: 4.5320

>NTDB_id=822699 R6U80_RS11065 WP_058220688.1 2247486..2248256(-) (pptA) [Lactococcus lactis strain NCK401]
MLKVTNLTGGYLGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIELDGLTLQQDLEGYRRKIGFIP
ETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLETFRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPF
MGLDPLAIQDLIDLMNDMKKSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTKG
NIPNSKEVVEAGKSNE

Nucleotide


Download         Length: 771 bp        

>NTDB_id=822699 R6U80_RS11065 WP_058220688.1 2247486..2248256(-) (pptA) [Lactococcus lactis strain NCK401]
ATGTTAAAAGTAACAAATCTAACAGGTGGCTATTTGGGACATCCTGTCTTAAAAGACCTTAATTTTGAAATTAAAGAAGG
TGAGTTAGTTGGACTCATTGGTTTAAATGGGGCAGGAAAATCGACGACAATTCAAGAAATTATTGGACTTTTGACTCCTT
ATTCTGGACAAATTGAATTAGACGGCTTAACTTTACAACAAGATTTAGAAGGCTATCGTAGAAAAATTGGTTTCATTCCA
GAAACACCAAGTTTGTATGAAGAATTGACTTTGCGTGAACATATTGAAGTGACAGCTTTAGCTTACGGGATTTCTGTTGA
CTTGGCTTTTGAACGTGCTGAAAAATTATTAGAAACTTTCCGCTTGAGTGATAAATTAGATTGGTTCCCTGTGAATTTTT
CAAAAGGGATGAAACAAAAAGTGATGATTATCTGCGCATTCTTAGTGGAACCTTCGCTCTATATTGTTGATGAACCTTTT
ATGGGACTTGATCCGCTTGCGATTCAGGATTTGATTGACTTGATGAATGACATGAAAAAATCAGGAAGTTCGATTTTAAT
GAGTACACATATCTTGTCCACAGCTGAAAAATTCTGTGATAAATTTATTGTTTTGCATGAAGGTCAAGTTGTTGCTTTTG
GAACAGTAGAAGAATTACGGACTCAATTTAATCAGCCTAAGGCAAGTTTAGATGAAATTTATCTTGCCTTAACAAAAGGA
AATATTCCAAACTCTAAAGAAGTTGTAGAGGCAGGAAAGTCAAATGAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

67.355

94.531

0.637
  pptA Streptococcus thermophilus LMD-9

66.942

94.531

0.633