Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   R6U80_RS09480 Genome accession   NZ_CP137623
Coordinates   1949439..1950110 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain NCK401     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1944439..1955110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS09455 (R6U80_09455) pheA 1944744..1945583 (-) 840 WP_023188548.1 prephenate dehydratase -
  R6U80_RS09460 (R6U80_09460) - 1945585..1946073 (-) 489 WP_017864896.1 shikimate kinase -
  R6U80_RS09465 (R6U80_09465) aroA 1946097..1947389 (-) 1293 WP_058206308.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  R6U80_RS09470 (R6U80_09470) - 1947510..1948574 (-) 1065 WP_033899975.1 prephenate dehydrogenase -
  R6U80_RS09475 (R6U80_09475) - 1948577..1949452 (-) 876 WP_003132784.1 HAMP domain-containing sensor histidine kinase -
  R6U80_RS09480 (R6U80_09480) braR 1949439..1950110 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  R6U80_RS09485 (R6U80_09485) - 1950113..1951177 (-) 1065 WP_313791937.1 VanZ family protein -
  R6U80_RS09490 (R6U80_09490) - 1951358..1953361 (-) 2004 WP_033899972.1 ABC transporter permease -
  R6U80_RS09495 (R6U80_09495) - 1953354..1954133 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  R6U80_RS09500 (R6U80_09500) - 1954148..1954291 (-) 144 WP_014570691.1 hypothetical protein -
  R6U80_RS09505 (R6U80_09505) - 1954322..1954681 (-) 360 WP_058223216.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=822686 R6U80_RS09480 WP_003132782.1 1949439..1950110(-) (braR) [Lactococcus lactis strain NCK401]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=822686 R6U80_RS09480 WP_003132782.1 1949439..1950110(-) (braR) [Lactococcus lactis strain NCK401]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGAC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGATATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACTAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413