Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   QCD61_RS26225 Genome accession   NZ_CP123771
Coordinates   5980619..5981047 (-) Length   142 a.a.
NCBI ID   WP_280944517.1    Uniprot ID   -
Organism   Pseudomonas viciae strain YsS1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 5975619..5986047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCD61_RS26210 (QCD61_26210) - 5977440..5979500 (-) 2061 WP_256453879.1 methyl-accepting chemotaxis protein -
  QCD61_RS26215 (QCD61_26215) - 5979657..5980196 (-) 540 WP_135847613.1 chemotaxis protein CheW -
  QCD61_RS26220 (QCD61_26220) pilH 5980207..5980572 (-) 366 WP_058544375.1 twitching motility response regulator PilH -
  QCD61_RS26225 (QCD61_26225) pilG 5980619..5981047 (-) 429 WP_280944517.1 response regulator Regulator
  QCD61_RS26230 (QCD61_26230) gshB 5981272..5982225 (+) 954 WP_135847615.1 glutathione synthase -
  QCD61_RS26235 (QCD61_26235) - 5982303..5983199 (+) 897 WP_135847616.1 energy transducer TonB -
  QCD61_RS26240 (QCD61_26240) - 5983434..5984003 (+) 570 WP_135847617.1 YqgE/AlgH family protein -
  QCD61_RS26245 (QCD61_26245) ruvX 5984003..5984440 (+) 438 WP_030137904.1 Holliday junction resolvase RuvX -
  QCD61_RS26250 (QCD61_26250) pyrR 5984527..5985033 (+) 507 WP_135847618.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15541.05 Da        Isoelectric Point: 7.3851

>NTDB_id=822666 QCD61_RS26225 WP_280944517.1 5980619..5981047(-) (pilG) [Pseudomonas viciae strain YsS1]
MAEHLTQQQPSALKVMVIDDSKTIRRTAETLLRNVGCEVITAIDGFDALAKIADHQPGIIFVDIMMPRLDGYQTCALIKN
NSAFKATPVIMLSSRDGLFDKAKGRIVGSDQFLTKPFSKEELLGAIQAHVPGFIAVQPHQAH

Nucleotide


Download         Length: 429 bp        

>NTDB_id=822666 QCD61_RS26225 WP_280944517.1 5980619..5981047(-) (pilG) [Pseudomonas viciae strain YsS1]
ATGGCAGAGCATCTTACGCAGCAGCAACCCAGTGCCTTGAAGGTCATGGTCATCGACGACTCGAAGACCATCCGCCGCAC
CGCCGAAACCCTGCTGCGCAACGTGGGGTGCGAGGTAATCACGGCCATCGACGGCTTCGACGCCCTGGCCAAGATCGCCG
ACCATCAGCCGGGCATCATCTTTGTCGACATCATGATGCCGCGCCTGGACGGTTACCAGACCTGCGCCCTGATCAAGAAC
AACAGCGCGTTCAAGGCCACGCCGGTGATCATGCTGTCGTCCCGGGACGGGTTGTTCGACAAGGCCAAGGGGCGCATCGT
CGGTTCCGATCAGTTTTTGACCAAGCCGTTCAGCAAGGAAGAACTGTTGGGGGCAATACAGGCCCATGTTCCGGGCTTTA
TCGCTGTCCAGCCGCACCAGGCACATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(15-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

77.119

83.099

0.641