Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R6U80_RS04480 Genome accession   NZ_CP137623
Coordinates   916207..917874 (+) Length   555 a.a.
NCBI ID   WP_313791726.1    Uniprot ID   -
Organism   Lactococcus lactis strain NCK401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 911207..922874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U80_RS04455 (R6U80_04455) - 912246..912485 (+) 240 WP_003131346.1 exodeoxyribonuclease VII small subunit -
  R6U80_RS04460 (R6U80_04460) - 912634..913791 (+) 1158 WP_058223414.1 glycerate kinase -
  R6U80_RS04465 (R6U80_04465) - 913873..914730 (+) 858 WP_021722025.1 polyprenyl synthetase family protein -
  R6U80_RS04470 (R6U80_04470) - 914810..915616 (+) 807 WP_003131349.1 TlyA family RNA methyltransferase -
  R6U80_RS04475 (R6U80_04475) - 915613..916059 (+) 447 WP_003131351.1 arginine repressor -
  R6U80_RS04480 (R6U80_04480) recN 916207..917874 (+) 1668 WP_313791726.1 DNA repair protein RecN Machinery gene
  R6U80_RS04485 (R6U80_04485) - 918600..919166 (+) 567 WP_289441143.1 TMEM175 family protein -
  R6U80_RS04490 (R6U80_04490) - 919264..919785 (+) 522 WP_003131354.1 DUF805 domain-containing protein -
  R6U80_RS04495 (R6U80_04495) - 919808..920740 (+) 933 WP_289441141.1 DUF805 domain-containing protein -
  R6U80_RS04500 (R6U80_04500) rsmH 920965..921918 (+) 954 WP_015426165.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  R6U80_RS04505 (R6U80_04505) - 922075..922455 (+) 381 WP_003131357.1 cell division protein FtsL -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62844.04 Da        Isoelectric Point: 4.6475

>NTDB_id=822656 R6U80_RS04480 WP_313791726.1 916207..917874(+) (recN) [Lactococcus lactis strain NCK401]
MLQEISIKNFAIIEEIHLSFESGMTILTGETGAGKSIIIDAMSLLLGGRASSDFVRHGANKAEIEGLFFFDKTPELKAVL
LELGFEEVDSEIILRREIFANGRSVCRINGQMVNLATLRQVGELLVDIHGQHDSQELMNPKSHLRLLDEFGDEAFDQIKN
NYKLKFENFKNLRQQLNLRQKNEQEFAQRIEILQFQAEEIEAAEINLEEDEQLVNRREKLNNIKNIADSLSSAYLALDDE
DNDYSSLNNIRTTMTELDKISNFDNDYQELADKTAESYYVLEEVANQIQRIMSDLEFNPAELLQIEDRIMTLTTLKKKYG
PELSDVMNYLEKVQLELSELTGSENDSENLENSVKFAQVQLIEASKKLNEARHKIAKEVEKDIKHELSELYMEKADFKVS
FEGAKFSANGNEHVEFFIQTNPGEGFKPLAKTASGGELSRLMLAIKSSFSRRENKTAIVFDEVDTGVSGRVAQAIANKIY
KIARHGQVLAISHLPQVVAIADRQFYIEKASTDDITTSTVRKLNAEERVNEIAKMLAGEDLTKEALAQAKRLLSK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=822656 R6U80_RS04480 WP_313791726.1 916207..917874(+) (recN) [Lactococcus lactis strain NCK401]
ATGTTACAAGAGATTTCAATCAAAAATTTTGCAATTATTGAAGAAATTCATCTATCCTTTGAGAGTGGAATGACGATTTT
AACTGGGGAAACTGGTGCGGGAAAATCAATAATTATTGATGCAATGTCTTTATTATTAGGTGGGCGTGCTTCGAGTGATT
TTGTGCGGCATGGGGCAAACAAAGCCGAAATAGAAGGTCTCTTTTTCTTTGATAAAACTCCAGAATTGAAGGCGGTATTA
TTAGAACTTGGCTTTGAAGAAGTAGATTCTGAAATTATTTTAAGACGTGAGATTTTTGCTAATGGTCGTTCCGTTTGTCG
AATCAATGGTCAAATGGTTAATTTAGCTACGCTAAGACAAGTGGGTGAATTATTAGTTGATATTCATGGTCAACACGATA
GCCAAGAATTGATGAATCCGAAAAGCCATCTTCGTTTACTTGATGAATTTGGTGACGAAGCCTTTGATCAGATAAAAAAT
AATTACAAACTCAAATTTGAAAACTTCAAAAATTTGCGTCAACAGCTCAATTTACGACAAAAAAATGAGCAAGAATTTGC
TCAAAGAATTGAAATTCTTCAATTTCAGGCTGAAGAAATTGAAGCGGCGGAAATTAATCTTGAAGAAGATGAACAATTAG
TTAATCGCCGAGAAAAGTTAAATAATATTAAAAATATTGCTGATTCGCTTAGTAGTGCTTATCTAGCGCTTGATGATGAA
GATAATGATTATTCAAGTCTTAATAATATCCGAACAACAATGACAGAATTGGATAAAATTAGTAACTTTGATAATGACTA
TCAAGAACTTGCTGACAAGACAGCTGAAAGTTATTATGTATTAGAAGAAGTTGCTAATCAAATTCAAAGAATCATGAGTG
ATTTAGAATTTAATCCAGCTGAACTTTTACAAATTGAAGACCGGATTATGACCTTGACCACTTTGAAGAAAAAATATGGC
CCAGAACTGTCCGATGTGATGAACTATTTAGAGAAAGTCCAACTTGAACTCTCAGAACTGACGGGTTCGGAAAATGACTC
AGAAAATCTAGAAAATTCAGTTAAATTTGCACAAGTTCAACTCATTGAAGCAAGTAAAAAACTTAATGAAGCGCGCCATA
AAATTGCCAAAGAAGTTGAAAAAGATATTAAACACGAACTTTCTGAGCTTTATATGGAAAAAGCTGATTTCAAAGTTAGT
TTTGAAGGGGCAAAGTTTTCGGCAAACGGGAATGAGCATGTTGAATTTTTTATTCAAACCAATCCGGGAGAAGGATTTAA
ACCGCTGGCAAAAACAGCTTCGGGTGGTGAACTTTCACGTTTAATGCTCGCTATAAAATCAAGCTTTTCAAGACGTGAAA
ATAAAACAGCCATTGTTTTTGATGAGGTCGATACTGGTGTTTCTGGTCGTGTTGCTCAAGCGATTGCTAATAAAATATAT
AAAATTGCTAGACATGGGCAAGTTCTTGCAATTTCTCACCTTCCACAAGTTGTGGCCATTGCCGATAGACAATTTTATAT
TGAAAAAGCTTCAACCGATGACATTACTACTTCCACAGTTAGAAAATTAAACGCTGAAGAAAGAGTAAATGAAATTGCGA
AAATGCTTGCTGGTGAAGATTTAACTAAAGAAGCCTTAGCTCAGGCTAAACGTTTATTGAGCAAATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_23)

(4-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.732

100

0.44