Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   R6U48_RS12010 Genome accession   NZ_CP137562
Coordinates   2566569..2567447 (+) Length   292 a.a.
NCBI ID   WP_019486743.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CPA0087     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2561569..2572447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U48_RS11995 (R6U48_11995) radC 2562386..2562880 (+) 495 WP_003292123.1 DNA repair protein RadC Machinery gene
  R6U48_RS12000 (R6U48_12000) - 2563149..2564309 (+) 1161 WP_023101505.1 hypothetical protein -
  R6U48_RS12005 (R6U48_12005) - 2564318..2566567 (+) 2250 WP_196495448.1 Mov34/MPN/PAD-1 family protein -
  R6U48_RS12010 (R6U48_12010) comEC 2566569..2567447 (+) 879 WP_019486743.1 hypothetical protein Machinery gene
  R6U48_RS12015 (R6U48_12015) - 2567444..2568121 (+) 678 WP_010792116.1 hypothetical protein -
  R6U48_RS12020 (R6U48_12020) - 2568338..2568775 (+) 438 WP_023083163.1 TIGR03757 family integrating conjugative element protein -
  R6U48_RS12025 (R6U48_12025) - 2568772..2569716 (+) 945 WP_023083162.1 TIGR03756 family integrating conjugative element protein -
  R6U48_RS12030 (R6U48_12030) - 2569727..2571133 (+) 1407 WP_023083161.1 integrating conjugative element protein -
  R6U48_RS12035 (R6U48_12035) - 2571130..2571483 (+) 354 WP_003140982.1 hypothetical protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33426.83 Da        Isoelectric Point: 5.7783

>NTDB_id=822582 R6U48_RS12010 WP_019486743.1 2566569..2567447(+) (comEC) [Pseudomonas aeruginosa strain CPA0087]
MPGEMILKIWDVEHGACAMLTHRSAYGVEGRLAMIDSGDNSTTGWKPSTYIKHYLKRNVLDYLFVTNADLDHISDLNNLW
KEGITVSTFFRNRSVSPEVMRIIKEASGELTEDIERYLDIHAGYVYPVDVPFDESMGGISVRTFWNSTPPFYDTNNLSMV
AFFKYGPFKILFPGDLEEDGWLALLEQPAFRAELIDTTVLVASHHGRENGYCRALFDYCHPRAIVMSDKAIVHDTQGMTQ
TYRQRVIDHWPNGVLVATTGKQRRVLTTRRDGWIQFNVNDRGDFTIYTECYG

Nucleotide


Download         Length: 879 bp        

>NTDB_id=822582 R6U48_RS12010 WP_019486743.1 2566569..2567447(+) (comEC) [Pseudomonas aeruginosa strain CPA0087]
ATGCCAGGCGAGATGATCTTGAAGATATGGGACGTTGAACATGGCGCCTGCGCCATGCTCACACATCGCTCTGCCTACGG
CGTGGAAGGGCGCCTGGCGATGATCGACTCGGGTGACAACAGCACCACAGGCTGGAAGCCGAGCACCTACATCAAGCACT
ACCTGAAGCGCAACGTTCTGGACTACCTGTTCGTGACGAATGCGGACCTCGACCACATCAGCGATCTGAACAACCTGTGG
AAAGAAGGAATCACGGTATCCACGTTCTTCCGCAATCGCAGCGTGTCACCCGAAGTCATGAGGATCATCAAGGAGGCCAG
CGGCGAACTGACCGAGGACATCGAACGATACTTGGACATTCATGCTGGCTACGTCTACCCCGTGGACGTCCCCTTCGATG
AGAGTATGGGAGGCATCTCGGTGCGGACGTTTTGGAACTCGACGCCACCCTTTTACGACACGAACAACCTGAGCATGGTG
GCATTCTTCAAGTACGGGCCATTCAAGATTCTGTTTCCCGGCGACCTTGAGGAAGACGGATGGCTGGCGCTGCTCGAACA
GCCGGCATTTCGAGCTGAGCTCATCGACACGACCGTGCTCGTGGCATCCCACCACGGCCGAGAGAACGGCTACTGCCGGG
CGCTATTCGACTACTGTCACCCGCGAGCGATCGTGATGTCCGACAAAGCAATCGTCCATGATACGCAGGGGATGACTCAG
ACCTATCGCCAGCGCGTCATAGATCACTGGCCGAACGGAGTTCTTGTCGCCACGACTGGAAAACAGCGCCGTGTGCTCAC
GACGCGACGCGATGGCTGGATTCAATTCAACGTCAATGATCGTGGCGATTTCACCATCTATACGGAGTGCTATGGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Legionella pneumophila str. Paris

39.35

94.863

0.373