Detailed information NTG0822580

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: R6U48_RS11695
• Genome accession: NZ_CP137562
• Coordinates: 2500270..2503119 (-)
• Length: 949 a.a.
• NCBI ID: WP_023101526.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain CPA0087
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2495270..2508119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R6U48_RS11675 (R6U48_11675)	yfdX1	2495499..2496407 (-)	909	WP_021567662.1	heat resistance protein YfdX1	-
R6U48_RS11680 (R6U48_11680)	hsp20-GI	2496429..2496887 (-)	459	WP_019485624.1	small heat shock protein sHSP20-GI	-
R6U48_RS11685 (R6U48_11685)	ftsH	2496966..2498795 (-)	1830	WP_023101528.1	ATP-dependent zinc metalloprotease FtsH	-
R6U48_RS11690 (R6U48_11690)	cls	2498823..2500253 (-)	1431	WP_023101527.1	cardiolipin synthase	-
R6U48_RS11695 (R6U48_11695)	clpC	2500270..2503119 (-)	2850	WP_023101526.1	heat shock survival AAA family ATPase ClpK	Regulator
R6U48_RS11700 (R6U48_11700)	-	2503213..2503782 (-)	570	WP_023101525.1	Hsp20/alpha crystallin family protein	-
R6U48_RS11705 (R6U48_11705)	-	2503818..2504099 (-)	282	WP_012761384.1	helix-turn-helix domain-containing protein	-
R6U48_RS11710 (R6U48_11710)	-	2504384..2504761 (+)	378	WP_016446188.1	IS110 family transposase	-
R6U48_RS11715 (R6U48_11715)	-	2504799..2505129 (-)	331	Protein_2300	IS66 family transposase zinc-finger binding domain-containing protein	-
R6U48_RS11720 (R6U48_11720)	-	2505406..2506485 (-)	1080	WP_023101524.1	IS5 family transposase	-
R6U48_RS11725 (R6U48_11725)	-	2506870..2507964 (+)	1095	WP_023101523.1	IS5 family transposase	-

Sequence

Protein

• Length: 949 a.a.
• Molecular weight: 104358.28 Da
• Isoelectric Point: 5.7316

>NTDB_id=822580 R6U48_RS11695 WP_023101526.1 2500270..2503119(-) (clpC) [Pseudomonas aeruginosa strain CPA0087]
MARKQCQVCGQPATVRVEANLNGRHSTMLLCDDHYRQLVRQQKRTVSPLEALFGSRSGLFEDFLGSDFFRIGDDAPSMAA
DTDEVVDASFGEPAPAGTGTARRRGSGLASRISEQSEALLQEAAKHAAEFGRPEVDTEHLLLALSDSDVVKTILGQFKIK
VDDLKRQIESEAKRGDKPFEGEIGVSPRVKDALSRAFVASNELGHSYVGPEHFLIGLAEEGEGLAANLLRRYGLTPQALR
QQVSKVVGKGAEDGRAETPTNTPELDKYSRDLTKMAREGKLDPVIGRAQEIETTIEVLARRKKNNPVLIGEPGVGKTAIV
EGLAQRMVAGEVPETLRDKRLVELNINAMVAGAKYRGEFEERVQKVLKEVTEHQGELILFIDEVHTIVGAGQGGGEGGLD
VANVFKPMMARGELNLIGATTLNEYQKYIEKDAALERRFQPVMVPEPTVAQTMMILRGLRDTFEAHHKVSITEDAIIAAA
ELSDRYITARFLPDKAIDLLDQAAARVKLSATARPVAVQELESELHQLRREQDYVAARKQYDQAAELGKRIEAKEAELKK
LVEEWERERASGSAEVKAEHVAQIVSRLTGIPVNELTVEEREKLLHLEQRLHERLVGQDEAVRAVADAVRLSRAGLREGG
KPVATFLFLGPTGVGKTELAKALAESIYGDEGALLRIDMSEYGERHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLL
LDEIEKAHPDVYNILLQVFDDGRLTDGKGRVVDFTNTIIIATSNLGSDIIQRRLKARGAAGEEYEKTKSEVMDVLRGHFR
PEFLNRIDEIIVFHALGKEEIRHIVGLQLDRVARNAASQGVTLTFDQTLIDHFAEEGYKPEFGARELKRLIRSELETALA
REMLGGGIGKADHASARWDDKAERVVFERQEPAAQPAEPEKPDAANVAEAPPNGESKPARKKKSAGGGS

Nucleotide

• Length: 2850 bp

>NTDB_id=822580 R6U48_RS11695 WP_023101526.1 2500270..2503119(-) (clpC) [Pseudomonas aeruginosa strain CPA0087]
ATGGCCAGAAAACAATGCCAAGTCTGCGGCCAGCCCGCCACGGTGCGGGTGGAAGCCAATCTCAATGGTCGCCACAGCAC
CATGCTGTTGTGTGACGATCACTATCGCCAACTGGTGCGCCAGCAAAAGCGCACCGTCTCACCGCTGGAAGCCTTGTTCG
GCTCGCGCAGCGGGCTGTTCGAAGACTTCCTTGGCAGCGACTTCTTCCGCATCGGTGACGACGCACCGTCCATGGCGGCC
GATACCGACGAGGTCGTCGATGCCTCGTTCGGCGAACCCGCGCCGGCCGGTACGGGCACCGCGCGCCGTCGCGGCAGTGG
GCTCGCCAGCCGTATCAGCGAACAGTCCGAGGCCCTATTGCAGGAGGCCGCCAAACATGCCGCCGAATTTGGCCGCCCCG
AAGTCGATACCGAACACCTGCTGCTGGCGCTATCCGACAGCGACGTGGTCAAGACCATCCTGGGGCAGTTCAAGATCAAG
GTCGATGACCTCAAGCGCCAGATCGAATCCGAAGCCAAGCGCGGCGATAAGCCGTTCGAGGGCGAGATCGGCGTGTCGCC
CCGGGTCAAGGACGCGCTCAGCCGTGCTTTCGTGGCCTCCAACGAACTCGGCCACTCTTATGTCGGGCCGGAGCATTTCC
TGATCGGGCTCGCCGAGGAAGGCGAAGGTTTGGCGGCCAACCTGCTGCGCCGTTACGGCCTCACGCCGCAAGCGCTGCGC
CAGCAGGTAAGCAAGGTGGTCGGCAAAGGGGCCGAGGATGGCCGCGCCGAGACGCCGACCAACACGCCGGAACTCGACAA
GTATTCGCGCGACCTCACCAAGATGGCGCGCGAGGGCAAGCTCGATCCGGTCATCGGCCGCGCGCAGGAGATCGAGACGA
CCATCGAAGTGCTGGCCCGGCGCAAGAAGAACAACCCGGTGCTGATCGGCGAGCCCGGCGTCGGCAAGACCGCCATCGTC
GAAGGGCTGGCGCAGCGCATGGTCGCCGGCGAAGTGCCCGAGACGCTGCGCGACAAGCGCCTGGTGGAACTCAACATCAA
TGCCATGGTGGCCGGCGCCAAGTACCGCGGCGAGTTCGAGGAGCGCGTGCAGAAGGTGCTCAAGGAAGTGACCGAGCACC
AGGGCGAGCTGATTCTCTTCATCGACGAAGTGCACACCATCGTCGGTGCAGGCCAGGGTGGCGGCGAAGGCGGGCTGGAC
GTGGCCAACGTGTTCAAGCCGATGATGGCGCGCGGCGAACTGAACCTGATCGGCGCCACCACGCTCAACGAGTATCAGAA
GTACATCGAGAAGGACGCCGCGCTGGAGCGTCGCTTCCAGCCGGTGATGGTGCCCGAGCCGACGGTAGCGCAGACCATGA
TGATCCTGCGCGGCCTGCGCGACACCTTCGAGGCGCACCACAAGGTCAGCATCACCGAGGATGCGATCATCGCCGCCGCC
GAGTTGTCGGACCGCTACATCACCGCGCGCTTTTTGCCTGACAAGGCCATCGACCTGCTCGACCAGGCGGCCGCGCGCGT
CAAGCTGTCGGCCACGGCCCGGCCGGTGGCCGTGCAGGAGCTGGAGTCCGAACTGCACCAGCTGCGGCGTGAACAGGATT
ACGTGGCCGCGCGCAAGCAGTACGACCAGGCCGCCGAGCTCGGCAAGCGCATCGAAGCCAAGGAGGCCGAGCTCAAGAAG
CTCGTCGAGGAATGGGAACGCGAGCGCGCCTCGGGCAGCGCCGAAGTCAAGGCCGAGCATGTCGCGCAGATCGTCTCGCG
CCTGACCGGCATTCCGGTCAACGAGCTGACGGTGGAAGAACGCGAGAAGCTGCTGCATCTGGAGCAGCGGCTGCACGAGC
GCCTGGTGGGCCAGGACGAAGCAGTACGTGCCGTGGCCGATGCCGTGCGGCTGTCGCGCGCGGGCCTGCGCGAAGGCGGC
AAGCCAGTGGCCACCTTCCTGTTCCTCGGGCCGACGGGTGTGGGCAAGACCGAACTCGCCAAGGCACTGGCCGAGTCCAT
CTATGGCGATGAGGGCGCGCTGCTGCGCATCGACATGTCCGAGTACGGTGAACGCCATACCGTGGCACGCTTGGTGGGCG
CGCCTCCGGGTTATGTGGGCTATGACGAGGGCGGCCAGCTCACCGAGAAGGTGCGTCGCAAACCCTACAGCGTGTTGTTG
CTCGATGAGATCGAAAAAGCGCACCCCGACGTCTACAACATCCTGCTGCAGGTATTCGACGACGGGCGGCTCACCGACGG
CAAGGGCCGGGTGGTGGATTTCACCAATACCATCATCATCGCCACCTCGAACTTGGGCTCGGACATCATCCAGCGTCGGC
TGAAGGCCCGTGGCGCCGCCGGCGAGGAATACGAGAAGACCAAGTCCGAGGTGATGGACGTGCTGCGCGGACACTTCCGC
CCCGAGTTCCTCAACCGCATCGACGAGATCATCGTCTTCCATGCGCTGGGTAAGGAGGAGATCCGCCATATCGTCGGCCT
GCAGCTCGATCGTGTGGCCCGCAACGCCGCCAGCCAGGGCGTGACGTTGACCTTCGACCAGACCTTGATCGACCACTTCG
CGGAGGAAGGCTACAAACCCGAGTTCGGCGCGCGCGAGCTCAAGCGGCTGATCCGCAGCGAGCTGGAAACCGCGCTGGCA
CGCGAGATGCTCGGTGGTGGCATCGGCAAGGCCGATCACGCCAGCGCCCGCTGGGATGACAAGGCCGAACGGGTGGTCTT
CGAGCGCCAGGAGCCAGCCGCGCAGCCGGCCGAGCCTGAAAAGCCCGATGCAGCGAACGTGGCCGAGGCACCGCCGAACG
GCGAGAGCAAGCCTGCGCGCAAGAAGAAGTCAGCGGGCGGCGGATCTTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (816-894)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (123-171)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (199-248)

• AAA domain (Cdc48 subfamily) (AAA_2) (641-810)

• AAA lid domain (AAA_lid_9) (449-547)

• ATPase family associated with various cellular activities (AAA) (AAA) (307-440)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	50.442	83.351	0.42
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.542	85.669	0.373
clpC	Streptococcus thermophilus LMD-9	42.373	87.039	0.369
clpC	Streptococcus thermophilus LMG 18311	42.284	86.723	0.367
clpC	Streptococcus pneumoniae Rx1	42.241	85.564	0.361
clpC	Streptococcus pneumoniae D39	42.241	85.564	0.361