Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R6U47_RS14490 Genome accession   NZ_CP137561
Coordinates   3086646..3086975 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3081646..3091975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS14475 (R6U47_14475) uvrB 3083033..3085045 (-) 2013 WP_324002420.1 excinuclease ABC subunit UvrB Machinery gene
  R6U47_RS14480 (R6U47_14480) - 3085233..3086429 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  R6U47_RS14490 (R6U47_14490) comEA/comE1 3086646..3086975 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  R6U47_RS14495 (R6U47_14495) - 3087166..3089163 (-) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  R6U47_RS14500 (R6U47_14500) - 3089294..3090319 (-) 1026 WP_009313766.1 glycosyltransferase family 4 protein -
  R6U47_RS14505 (R6U47_14505) - 3090316..3091275 (-) 960 WP_023087147.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=822455 R6U47_RS14490 WP_003104586.1 3086646..3086975(-) (comEA/comE1) [Pseudomonas aeruginosa strain CPA0053]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=822455 R6U47_RS14490 WP_003104586.1 3086646..3086975(-) (comEA/comE1) [Pseudomonas aeruginosa strain CPA0053]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385