Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   R6U47_RS13780 Genome accession   NZ_CP137561
Coordinates   2930372..2930986 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2925372..2935986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS13760 (R6U47_13760) - 2926815..2927444 (+) 630 WP_003091190.1 CsiV family protein -
  R6U47_RS13765 (R6U47_13765) - 2927490..2928227 (-) 738 WP_003122475.1 S-methyl-5'-thioinosine phosphorylase -
  R6U47_RS13770 (R6U47_13770) nagZ 2928239..2929237 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  R6U47_RS13775 (R6U47_13775) psrA 2929439..2930140 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  R6U47_RS13780 (R6U47_13780) dinR/lexA 2930372..2930986 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  R6U47_RS13785 (R6U47_13785) sulA 2930998..2931483 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  R6U47_RS13790 (R6U47_13790) - 2931505..2931738 (-) 234 WP_003109483.1 hypothetical protein -
  R6U47_RS13795 (R6U47_13795) - 2931944..2932462 (-) 519 WP_003113979.1 DUF6586 family protein -
  R6U47_RS13800 (R6U47_13800) topA 2932569..2935175 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  R6U47_RS13805 (R6U47_13805) - 2935266..2935529 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=822450 R6U47_RS13780 WP_003091196.1 2930372..2930986(+) (dinR/lexA) [Pseudomonas aeruginosa strain CPA0053]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=822450 R6U47_RS13780 WP_003091196.1 2930372..2930986(+) (dinR/lexA) [Pseudomonas aeruginosa strain CPA0053]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATTCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387