Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   R6U47_RS13540 Genome accession   NZ_CP137561
Coordinates   2882156..2882512 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CPA0053     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2877156..2887512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6U47_RS13515 (R6U47_13515) - 2877522..2878154 (-) 633 WP_023087171.1 DUF4823 domain-containing protein -
  R6U47_RS13520 (R6U47_13520) - 2878219..2879115 (-) 897 WP_023087170.1 radical SAM protein -
  R6U47_RS13525 (R6U47_13525) - 2879282..2879920 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  R6U47_RS13530 (R6U47_13530) - 2880006..2881139 (+) 1134 WP_003104119.1 aminotransferase class V-fold PLP-dependent enzyme -
  R6U47_RS13535 (R6U47_13535) - 2881365..2882141 (-) 777 WP_003091117.1 TatD family hydrolase -
  R6U47_RS13540 (R6U47_13540) pilZ 2882156..2882512 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  R6U47_RS13545 (R6U47_13545) - 2882546..2883532 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  R6U47_RS13550 (R6U47_13550) tmk 2883525..2884157 (-) 633 WP_003091125.1 dTMP kinase -
  R6U47_RS13555 (R6U47_13555) mltG 2884186..2885235 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  R6U47_RS13560 (R6U47_13560) pabC 2885241..2886056 (-) 816 WP_023087169.1 aminodeoxychorismate lyase -
  R6U47_RS13565 (R6U47_13565) fabF 2886056..2887300 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=822447 R6U47_RS13540 WP_003091119.1 2882156..2882512(-) (pilZ) [Pseudomonas aeruginosa strain CPA0053]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=822447 R6U47_RS13540 WP_003091119.1 2882156..2882512(-) (pilZ) [Pseudomonas aeruginosa strain CPA0053]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449