Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QFX60_RS07625 Genome accession   NZ_CP123748
Coordinates   1577986..1578432 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 1.2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1572986..1583432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX60_RS07595 gcvPA 1573912..1575258 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX60_RS07600 gcvT 1575278..1576369 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX60_RS07605 - 1576528..1577052 (-) 525 WP_001015117.1 shikimate kinase -
  QFX60_RS07610 - 1577042..1577188 (-) 147 WP_001789879.1 hypothetical protein -
  QFX60_RS07615 comGF 1577285..1577782 (-) 498 WP_304984668.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX60_RS07620 comGE 1577700..1577999 (-) 300 WP_304984667.1 competence protein ComGE Machinery gene
  QFX60_RS07625 comGD 1577986..1578432 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX60_RS07630 comGC 1578410..1578721 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX60_RS07635 comGB 1578735..1579805 (-) 1071 WP_000775708.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX60_RS07640 comGA 1579777..1580751 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX60_RS07645 - 1580803..1581426 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX60_RS07650 - 1581423..1581752 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QFX60_RS07655 - 1581752..1582738 (-) 987 WP_000161314.1 ROK family glucokinase -
  QFX60_RS07660 - 1582735..1582938 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=822377 QFX60_RS07625 WP_001790850.1 1577986..1578432(-) (comGD) [Staphylococcus aureus strain 1.2]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=822377 QFX60_RS07625 WP_001790850.1 1577986..1578432(-) (comGD) [Staphylococcus aureus strain 1.2]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993