Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   R6K63_RS11205 Genome accession   NZ_CP137556
Coordinates   2344549..2344905 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain CDC1270     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2339549..2349905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6K63_RS11180 fabF 2339761..2341005 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  R6K63_RS11185 pabC 2341005..2341820 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  R6K63_RS11190 mltG 2341826..2342875 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  R6K63_RS11195 tmk 2342904..2343536 (+) 633 WP_003122486.1 dTMP kinase -
  R6K63_RS11200 - 2343529..2344515 (+) 987 WP_003110200.1 DNA polymerase III subunit delta' -
  R6K63_RS11205 pilZ 2344549..2344905 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  R6K63_RS11210 - 2344920..2345696 (+) 777 WP_003091117.1 TatD family hydrolase -
  R6K63_RS11215 - 2345922..2347055 (-) 1134 WP_023106226.1 aminotransferase class V-fold PLP-dependent enzyme -
  R6K63_RS11220 - 2347141..2347779 (+) 639 WP_023091594.1 TetR/AcrR family transcriptional regulator -
  R6K63_RS11225 - 2347946..2348842 (+) 897 WP_023115235.1 radical SAM protein -
  R6K63_RS11230 - 2348907..2349539 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=822346 R6K63_RS11205 WP_003091119.1 2344549..2344905(+) (pilZ) [Pseudomonas aeruginosa strain CDC1270]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=822346 R6K63_RS11205 WP_003091119.1 2344549..2344905(+) (pilZ) [Pseudomonas aeruginosa strain CDC1270]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTTTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCTCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449