Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | R2B38_RS38725 | Genome accession | NZ_CP137549 |
| Coordinates | 8737411..8739882 (+) | Length | 823 a.a. |
| NCBI ID | WP_318020474.1 | Uniprot ID | - |
| Organism | Streptomyces sp. N50 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 8732411..8744882
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R2B38_RS38710 (R2B38_38710) | - | 8732670..8733605 (+) | 936 | WP_318020472.1 | lysophospholipid acyltransferase family protein | - |
| R2B38_RS38715 (R2B38_38715) | - | 8733725..8734855 (+) | 1131 | WP_318020473.1 | alanine--tRNA ligase-related protein | - |
| R2B38_RS38720 (R2B38_38720) | - | 8734920..8737271 (-) | 2352 | Protein_7656 | ATP-binding cassette domain-containing protein | - |
| R2B38_RS38725 (R2B38_38725) | clpC | 8737411..8739882 (+) | 2472 | WP_318020474.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| R2B38_RS38730 (R2B38_38730) | - | 8739916..8740938 (+) | 1023 | WP_318020475.1 | alcohol dehydrogenase | - |
| R2B38_RS38735 (R2B38_38735) | - | 8740928..8741923 (-) | 996 | WP_318020476.1 | LLM class flavin-dependent oxidoreductase | - |
| R2B38_RS38740 (R2B38_38740) | rpmF | 8741966..8742136 (-) | 171 | WP_318020477.1 | 50S ribosomal protein L32 | - |
| R2B38_RS38745 (R2B38_38745) | - | 8742225..8742647 (-) | 423 | WP_318020478.1 | (2Fe-2S) ferredoxin domain-containing protein | - |
| R2B38_RS38750 (R2B38_38750) | - | 8742720..8743211 (+) | 492 | WP_318020479.1 | hypothetical protein | - |
| R2B38_RS38755 (R2B38_38755) | - | 8743233..8743448 (-) | 216 | WP_318020480.1 | dodecin | - |
| R2B38_RS38760 (R2B38_38760) | egtD | 8743549..8744511 (-) | 963 | WP_318020481.1 | L-histidine N(alpha)-methyltransferase | - |
Sequence
Protein
Download Length: 823 a.a. Molecular weight: 90284.37 Da Isoelectric Point: 4.7891
>NTDB_id=822301 R2B38_RS38725 WP_318020474.1 8737411..8739882(+) (clpC) [Streptomyces sp. N50]
MSTPGFGFGRSPFEEFDELMSRYFGGSGPASPARRAQRVDIGSLLSERARELVAQARDIAAVEGSEELDARHLLAAATEQ
ESTRRLLAEAGADPDRIRERLTAGEGSGPKTEPTTLTPAAKRALLDAYQISRAEDSSYIGPEHLLRALAANPESAAGQAL
TGSGWESDRMPTGAEPERKRPSSTPTVDEYGRDLTEDARAGRLDPVIGRDEEVEQTIEVLSRRSKNNPVLIGDPGVGKTA
VVEGIAQRIIAGDVPKTLAGKRLVSLDLAGMVAGTKYRGEFEERLKKLLDEVSEHSDELVLFLDELHTVVGAGGGGDGAL
DAGNMLKPALARGQLHLIGATTVDEYRRYIEKDSALERRFAPILIGEPTVDDTIEILRGLRDRYEAHHQVRITDEAVVAA
AELSDRYITARFLPDKAIDLMDQAAARVRLRAKTPLSDDREVEDRLAALNREKDQAVADEEYERAKEIRDRIRDTEAELK
AGGSAEEQAPKVTAEDIAEVVSRTTGIPVAQLTEEERARLMKLEEHLHERVVGQDEAITAVARAVRRARAGMSDPNRPIG
SFLFLGPTGVGKTELARALAAALFGDEGRMIRLDMSEFQERHTVSRLVGAPPGYVGHEEAGQLTEAVRRQPYAVLLLDEV
EKAHPDVFNTLLQLLDDGRLTDSQGRTVDFKNTVVIMTSNIGADRILAAGVDDYAKVRETVMPVLNQHFRPEFLNRIDEI
IVFRGLERAQLRDIVDLLLEHTRRRLHAQDVTLDVTDAAADLLANLGYQPDFGARPLRRTIQREVDDRLADMLLAGELNA
GDQARVDASDGTIEIRARQAAEH
MSTPGFGFGRSPFEEFDELMSRYFGGSGPASPARRAQRVDIGSLLSERARELVAQARDIAAVEGSEELDARHLLAAATEQ
ESTRRLLAEAGADPDRIRERLTAGEGSGPKTEPTTLTPAAKRALLDAYQISRAEDSSYIGPEHLLRALAANPESAAGQAL
TGSGWESDRMPTGAEPERKRPSSTPTVDEYGRDLTEDARAGRLDPVIGRDEEVEQTIEVLSRRSKNNPVLIGDPGVGKTA
VVEGIAQRIIAGDVPKTLAGKRLVSLDLAGMVAGTKYRGEFEERLKKLLDEVSEHSDELVLFLDELHTVVGAGGGGDGAL
DAGNMLKPALARGQLHLIGATTVDEYRRYIEKDSALERRFAPILIGEPTVDDTIEILRGLRDRYEAHHQVRITDEAVVAA
AELSDRYITARFLPDKAIDLMDQAAARVRLRAKTPLSDDREVEDRLAALNREKDQAVADEEYERAKEIRDRIRDTEAELK
AGGSAEEQAPKVTAEDIAEVVSRTTGIPVAQLTEEERARLMKLEEHLHERVVGQDEAITAVARAVRRARAGMSDPNRPIG
SFLFLGPTGVGKTELARALAAALFGDEGRMIRLDMSEFQERHTVSRLVGAPPGYVGHEEAGQLTEAVRRQPYAVLLLDEV
EKAHPDVFNTLLQLLDDGRLTDSQGRTVDFKNTVVIMTSNIGADRILAAGVDDYAKVRETVMPVLNQHFRPEFLNRIDEI
IVFRGLERAQLRDIVDLLLEHTRRRLHAQDVTLDVTDAAADLLANLGYQPDFGARPLRRTIQREVDDRLADMLLAGELNA
GDQARVDASDGTIEIRARQAAEH
Nucleotide
Download Length: 2472 bp
>NTDB_id=822301 R2B38_RS38725 WP_318020474.1 8737411..8739882(+) (clpC) [Streptomyces sp. N50]
ATGAGCACTCCCGGATTCGGTTTCGGACGCAGCCCCTTCGAGGAATTCGACGAGCTGATGTCCCGGTATTTCGGCGGTTC
GGGACCGGCGTCACCGGCACGCCGGGCCCAGCGCGTCGACATCGGGAGCCTGCTCTCCGAACGGGCCCGTGAGCTGGTGG
CCCAGGCGCGGGACATCGCCGCCGTCGAGGGCAGCGAGGAACTCGACGCCCGGCATCTGCTGGCCGCCGCCACCGAGCAG
GAGTCGACCCGACGGCTGCTCGCCGAGGCGGGCGCCGACCCCGACCGGATCCGGGAACGGCTGACCGCCGGTGAGGGGAG
TGGGCCGAAGACCGAACCCACCACGCTCACCCCGGCCGCCAAGCGGGCCCTGCTCGACGCGTACCAGATCTCCCGTGCCG
AGGACTCCTCGTACATCGGCCCCGAGCATCTGCTGCGCGCGCTGGCCGCCAACCCCGAGTCGGCCGCCGGACAGGCCCTC
ACCGGCAGCGGCTGGGAGAGCGACCGGATGCCCACCGGTGCCGAGCCCGAGCGGAAGAGGCCCAGCAGCACGCCGACCGT
CGACGAGTACGGGCGTGACCTCACCGAGGACGCCCGCGCCGGGCGGCTCGACCCGGTGATCGGGCGGGACGAGGAGGTCG
AGCAGACCATCGAGGTGCTCTCCCGGCGCAGCAAGAACAACCCCGTCCTCATCGGCGACCCCGGCGTCGGCAAGACCGCC
GTCGTCGAGGGCATCGCCCAGCGGATCATCGCCGGTGACGTGCCGAAGACCCTGGCGGGCAAGCGGCTCGTCTCGCTGGA
CCTGGCCGGGATGGTCGCCGGCACCAAGTACCGGGGCGAGTTCGAGGAGCGGCTGAAGAAGCTCCTCGACGAGGTGAGCG
AGCACAGTGACGAACTGGTGCTGTTCCTCGACGAGTTGCACACCGTCGTCGGTGCGGGGGGAGGGGGCGACGGTGCTCTC
GACGCGGGGAACATGCTCAAACCCGCCCTGGCCCGTGGGCAGTTGCACCTCATCGGTGCCACCACCGTCGACGAGTACCG
CAGGTACATCGAGAAGGACTCCGCGCTGGAGCGGCGCTTCGCGCCCATCCTGATCGGCGAACCGACCGTCGACGACACCA
TCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCCCACCATCAAGTCCGTATCACCGACGAGGCGGTTGTCGCGGCG
GCCGAACTCTCCGACCGGTACATCACCGCCCGCTTCCTGCCCGACAAGGCCATCGACCTGATGGACCAGGCGGCGGCGCG
GGTACGGCTGCGGGCCAAGACCCCGCTCTCCGACGACCGGGAGGTCGAGGACAGGCTCGCCGCCCTCAACCGGGAGAAGG
ACCAGGCCGTCGCCGACGAGGAGTACGAGCGGGCCAAGGAGATCCGCGACCGGATCAGGGACACCGAGGCCGAGTTGAAG
GCGGGCGGCTCCGCCGAGGAGCAGGCGCCCAAGGTCACCGCCGAGGACATCGCCGAGGTTGTCTCCCGCACCACCGGCAT
CCCCGTCGCCCAGCTCACCGAGGAGGAGCGCGCTCGGCTGATGAAGCTGGAGGAGCACCTCCACGAGCGCGTGGTCGGCC
AGGACGAGGCCATCACCGCCGTCGCCCGGGCCGTACGCCGCGCCCGGGCCGGCATGAGCGACCCGAACCGGCCCATCGGC
AGCTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAGCTGGCCCGCGCCCTCGCCGCCGCCCTCTTCGGCGACGA
GGGCCGCATGATCCGCCTCGACATGAGCGAGTTCCAGGAACGGCACACCGTCTCCCGCCTGGTCGGAGCCCCTCCCGGAT
ACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAGGCCGTCCGCAGGCAGCCGTACGCCGTGCTGCTGCTCGACGAGGTC
GAGAAGGCGCATCCCGATGTCTTCAACACCCTGCTGCAACTCCTCGACGACGGGCGGCTCACCGACTCGCAGGGGCGCAC
CGTCGACTTCAAGAACACCGTGGTGATCATGACGTCGAACATCGGCGCCGACCGCATCCTCGCGGCGGGCGTCGACGACT
ACGCCAAGGTCCGCGAGACGGTGATGCCGGTCCTGAACCAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATC
ATCGTCTTCCGCGGGCTGGAACGCGCCCAACTCCGCGACATCGTCGACCTGTTGCTGGAACACACCCGGCGCAGGCTGCA
CGCCCAGGACGTCACCCTGGACGTCACCGACGCGGCGGCGGACCTGCTGGCCAACCTCGGCTACCAACCCGACTTCGGCG
CCCGCCCGTTGCGCCGCACCATCCAGCGCGAGGTCGACGACCGGCTCGCCGACATGCTCCTCGCCGGTGAACTGAACGCG
GGCGACCAGGCCCGGGTCGACGCGAGCGACGGCACGATCGAGATCAGGGCACGTCAGGCGGCCGAGCACTAG
ATGAGCACTCCCGGATTCGGTTTCGGACGCAGCCCCTTCGAGGAATTCGACGAGCTGATGTCCCGGTATTTCGGCGGTTC
GGGACCGGCGTCACCGGCACGCCGGGCCCAGCGCGTCGACATCGGGAGCCTGCTCTCCGAACGGGCCCGTGAGCTGGTGG
CCCAGGCGCGGGACATCGCCGCCGTCGAGGGCAGCGAGGAACTCGACGCCCGGCATCTGCTGGCCGCCGCCACCGAGCAG
GAGTCGACCCGACGGCTGCTCGCCGAGGCGGGCGCCGACCCCGACCGGATCCGGGAACGGCTGACCGCCGGTGAGGGGAG
TGGGCCGAAGACCGAACCCACCACGCTCACCCCGGCCGCCAAGCGGGCCCTGCTCGACGCGTACCAGATCTCCCGTGCCG
AGGACTCCTCGTACATCGGCCCCGAGCATCTGCTGCGCGCGCTGGCCGCCAACCCCGAGTCGGCCGCCGGACAGGCCCTC
ACCGGCAGCGGCTGGGAGAGCGACCGGATGCCCACCGGTGCCGAGCCCGAGCGGAAGAGGCCCAGCAGCACGCCGACCGT
CGACGAGTACGGGCGTGACCTCACCGAGGACGCCCGCGCCGGGCGGCTCGACCCGGTGATCGGGCGGGACGAGGAGGTCG
AGCAGACCATCGAGGTGCTCTCCCGGCGCAGCAAGAACAACCCCGTCCTCATCGGCGACCCCGGCGTCGGCAAGACCGCC
GTCGTCGAGGGCATCGCCCAGCGGATCATCGCCGGTGACGTGCCGAAGACCCTGGCGGGCAAGCGGCTCGTCTCGCTGGA
CCTGGCCGGGATGGTCGCCGGCACCAAGTACCGGGGCGAGTTCGAGGAGCGGCTGAAGAAGCTCCTCGACGAGGTGAGCG
AGCACAGTGACGAACTGGTGCTGTTCCTCGACGAGTTGCACACCGTCGTCGGTGCGGGGGGAGGGGGCGACGGTGCTCTC
GACGCGGGGAACATGCTCAAACCCGCCCTGGCCCGTGGGCAGTTGCACCTCATCGGTGCCACCACCGTCGACGAGTACCG
CAGGTACATCGAGAAGGACTCCGCGCTGGAGCGGCGCTTCGCGCCCATCCTGATCGGCGAACCGACCGTCGACGACACCA
TCGAGATCCTGCGCGGCCTGCGCGACCGCTACGAGGCCCACCATCAAGTCCGTATCACCGACGAGGCGGTTGTCGCGGCG
GCCGAACTCTCCGACCGGTACATCACCGCCCGCTTCCTGCCCGACAAGGCCATCGACCTGATGGACCAGGCGGCGGCGCG
GGTACGGCTGCGGGCCAAGACCCCGCTCTCCGACGACCGGGAGGTCGAGGACAGGCTCGCCGCCCTCAACCGGGAGAAGG
ACCAGGCCGTCGCCGACGAGGAGTACGAGCGGGCCAAGGAGATCCGCGACCGGATCAGGGACACCGAGGCCGAGTTGAAG
GCGGGCGGCTCCGCCGAGGAGCAGGCGCCCAAGGTCACCGCCGAGGACATCGCCGAGGTTGTCTCCCGCACCACCGGCAT
CCCCGTCGCCCAGCTCACCGAGGAGGAGCGCGCTCGGCTGATGAAGCTGGAGGAGCACCTCCACGAGCGCGTGGTCGGCC
AGGACGAGGCCATCACCGCCGTCGCCCGGGCCGTACGCCGCGCCCGGGCCGGCATGAGCGACCCGAACCGGCCCATCGGC
AGCTTCCTCTTCCTCGGCCCCACCGGCGTCGGCAAGACCGAGCTGGCCCGCGCCCTCGCCGCCGCCCTCTTCGGCGACGA
GGGCCGCATGATCCGCCTCGACATGAGCGAGTTCCAGGAACGGCACACCGTCTCCCGCCTGGTCGGAGCCCCTCCCGGAT
ACGTCGGCCACGAGGAGGCCGGCCAGCTCACCGAGGCCGTCCGCAGGCAGCCGTACGCCGTGCTGCTGCTCGACGAGGTC
GAGAAGGCGCATCCCGATGTCTTCAACACCCTGCTGCAACTCCTCGACGACGGGCGGCTCACCGACTCGCAGGGGCGCAC
CGTCGACTTCAAGAACACCGTGGTGATCATGACGTCGAACATCGGCGCCGACCGCATCCTCGCGGCGGGCGTCGACGACT
ACGCCAAGGTCCGCGAGACGGTGATGCCGGTCCTGAACCAGCACTTCCGCCCCGAGTTCCTCAACCGCATCGACGAGATC
ATCGTCTTCCGCGGGCTGGAACGCGCCCAACTCCGCGACATCGTCGACCTGTTGCTGGAACACACCCGGCGCAGGCTGCA
CGCCCAGGACGTCACCCTGGACGTCACCGACGCGGCGGCGGACCTGCTGGCCAACCTCGGCTACCAACCCGACTTCGGCG
CCCGCCCGTTGCGCCGCACCATCCAGCGCGAGGTCGACGACCGGCTCGCCGACATGCTCCTCGCCGGTGAACTGAACGCG
GGCGACCAGGCCCGGGTCGACGCGAGCGACGGCACGATCGAGATCAGGGCACGTCAGGCGGCCGAGCACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
50.249 |
97.691 |
0.491 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.301 |
95.261 |
0.441 |
| clpC | Streptococcus pneumoniae TIGR4 |
42.443 |
100 |
0.426 |
| clpC | Streptococcus pneumoniae D39 |
42.443 |
100 |
0.426 |
| clpC | Streptococcus pneumoniae Rx1 |
42.443 |
100 |
0.426 |
| clpC | Streptococcus mutans UA159 |
42.125 |
99.514 |
0.419 |
| clpE | Streptococcus mutans UA159 |
51.756 |
79.587 |
0.412 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.489 |
83.232 |
0.412 |
| clpE | Streptococcus pneumoniae Rx1 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae TIGR4 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae R6 |
50.938 |
77.764 |
0.396 |
| clpE | Streptococcus pneumoniae D39 |
50.938 |
77.764 |
0.396 |
| clpC | Streptococcus thermophilus LMD-9 |
50 |
77.521 |
0.388 |
| clpC | Streptococcus thermophilus LMG 18311 |
49.53 |
77.521 |
0.384 |