Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   R2B38_RS30290 Genome accession   NZ_CP137549
Coordinates   6687291..6689504 (+) Length   737 a.a.
NCBI ID   WP_318019055.1    Uniprot ID   -
Organism   Streptomyces sp. N50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6682291..6694504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B38_RS30280 (R2B38_30280) - 6682354..6685296 (-) 2943 WP_318019053.1 tetratricopeptide repeat protein -
  R2B38_RS30285 (R2B38_30285) - 6685296..6687122 (-) 1827 WP_318019054.1 HSP90 family protein -
  R2B38_RS30290 (R2B38_30290) recG 6687291..6689504 (+) 2214 WP_318019055.1 ATP-dependent DNA helicase RecG Machinery gene
  R2B38_RS30295 (R2B38_30295) rsmD 6689584..6690171 (+) 588 WP_318019056.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  R2B38_RS30300 (R2B38_30300) coaD 6690198..6690677 (+) 480 WP_318021832.1 pantetheine-phosphate adenylyltransferase -
  R2B38_RS30305 (R2B38_30305) - 6690777..6691856 (+) 1080 WP_318019057.1 ATP synthase F0 subunit B -
  R2B38_RS30310 (R2B38_30310) - 6691990..6692643 (+) 654 WP_033282673.1 YceD family protein -
  R2B38_RS30315 (R2B38_30315) rpmF 6692646..6692819 (+) 174 WP_015657589.1 50S ribosomal protein L32 -
  R2B38_RS30320 (R2B38_30320) rnc 6692839..6693684 (+) 846 WP_033282672.1 ribonuclease III -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79926.59 Da        Isoelectric Point: 6.3970

>NTDB_id=822285 R2B38_RS30290 WP_318019055.1 6687291..6689504(+) (recG) [Streptomyces sp. N50]
MDLVPALEEPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLAELPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGSGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLKGDAEEAVETWAGTLI
PIYPATAKLESWKIGKALQTALPSAQEAVDPLPDSLREGRGLVSLPEALLKIHRPHTKADIAAARDRLKWDEAFVLQVAL
ARRRHADAQLPAVARKPTPDGLLTAFDDRLPFTLTDGQVKVSKEIFDDLATEHPMHRLLQGEVGSGKTMVALRAMLAVVD
AGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGAERATKVTLLTGSMGTAGRRQALLDLVTGEAGIVIGTHALIED
KVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPAAD
KPHFLARAWERVREEVSNGHQAYVVCPRIGDEDDDPKKAGKAKKKSPEDEAEKRPPLAVLDIAAQLAKGPLQGLKIEVLH
GRMHPDDKDAVMRRFAAGDTDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAAGLCLLVSEMPEAS
PARQRLNAVASTLDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLSVIEDEEVIAEAREEATKVVEADPDLEHLPALRT
ALDALLDEEREQYLEKG

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=822285 R2B38_RS30290 WP_318019055.1 6687291..6689504(+) (recG) [Streptomyces sp. N50]
ATGGATCTCGTGCCCGCACTGGAAGAACCACTCAAAAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCATCT
CGGCCTGCACACAGTAGGCGACCTCCTGCACCACTACCCGCGCAGATACGAGGAGCGGGGCCAGCTCACGCACCTCGCCG
AGCTGCCGATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGCCTGCACACCTTCGCGTCCAGTAAGGCC
CCCCGGGGCAAGGGCCAGCGTCTCGAAGTCACGATCACGGACGGCAGCGGCCGGCTCCAACTCGTCTTCTTCGGCTCGGG
AGTTCACAAACCCCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCCGGCAAGGTCTCCGTCTTCAACCGCCGCC
TGCAACTCGCGCATCCGGCGTACGAGTTGCTGAAGGGCGACGCCGAGGAAGCGGTGGAGACCTGGGCGGGCACCCTGATC
CCCATCTACCCCGCCACCGCCAAGCTGGAGTCCTGGAAGATCGGCAAGGCCCTTCAGACGGCACTCCCCAGCGCCCAGGA
AGCCGTGGACCCCCTCCCGGACTCCCTGCGCGAAGGCCGAGGCCTGGTCTCCCTCCCGGAGGCACTCCTCAAGATCCACC
GCCCGCACACCAAGGCGGACATCGCCGCGGCCCGCGACCGCCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTGGCCCTG
GCCCGCCGCCGCCACGCGGACGCCCAACTCCCGGCGGTGGCCCGCAAACCGACCCCGGACGGCCTCCTCACGGCCTTCGA
CGACCGCCTTCCGTTCACCCTCACGGATGGGCAGGTGAAGGTGTCCAAGGAGATCTTCGATGACCTGGCTACGGAGCATC
CGATGCACCGGCTGCTGCAAGGGGAAGTGGGTAGCGGAAAAACAATGGTGGCCCTCCGAGCCATGCTCGCCGTGGTCGAC
GCCGGCGGGCAGGCAGCCATGCTCGCGCCCACCGAAGTGCTCGCGCAGCAGCACCACCGCTCCATCACCGAGATGATGGG
GGAGTTGGCCGAGGGCGGGATGCTGGGCGGGGCCGAGCGGGCGACCAAGGTCACGTTGCTCACGGGTTCCATGGGGACGG
CCGGGCGGCGTCAGGCCCTCCTCGACCTCGTCACCGGTGAGGCCGGGATCGTGATCGGCACGCACGCGTTGATCGAGGAC
AAGGTCCAGTTCCACGACCTGGGCCTGGTCGTGGTCGACGAACAGCACCGCTTCGGCGTCGAACAGCGCGACGCCCTGCG
CGGCAAGGGCAAGCAGCCCCCGCACCTCCTCGTCATGACCGCGACCCCCATCCCGCGCACGGTCGCCATGACGGTCTTCG
GCGACCTGGAGACCTCGGTCCTCGACCAACTCCCGGCCGGCCGCTCGCCGATCGCCAGCCATGTCGTCCCCGCAGCGGAC
AAACCCCACTTCCTGGCCCGCGCCTGGGAGCGCGTCCGCGAGGAGGTCTCCAACGGCCATCAGGCGTACGTCGTCTGCCC
CCGCATCGGCGACGAGGACGACGACCCCAAGAAGGCCGGCAAGGCCAAGAAGAAGTCCCCCGAGGACGAGGCGGAGAAGC
GCCCACCGCTCGCCGTCCTGGACATCGCGGCCCAGCTCGCCAAGGGCCCGCTCCAGGGGCTGAAGATCGAGGTGCTGCAC
GGCCGTATGCACCCCGACGACAAGGACGCGGTGATGCGCCGTTTCGCCGCCGGGGACACGGACGTCCTGGTCGCGACCAC
GGTCATCGAGGTCGGCGTCAACGTGCCCAACGCCACGGCCATGGTGATCATGGACGCCGACCGCTTCGGCGTCTCCCAGC
TCCACCAGCTCCGCGGCCGGGTGGGCCGCGGCTCGGCCGCCGGCCTCTGCCTCCTGGTCTCCGAAATGCCCGAGGCCAGC
CCGGCCCGCCAGCGCCTCAACGCCGTCGCCTCCACCCTCGACGGCTTCGAACTCTCCCGCATCGACCTCGAACAGCGCCG
CGAGGGCGATGTGTTGGGGCAGGCGCAGTCCGGTGCCCGCACTTCGCTCCGGGTCCTGTCGGTCATTGAGGACGAGGAGG
TCATCGCGGAGGCGCGGGAGGAGGCGACGAAGGTGGTGGAGGCCGATCCCGACCTGGAGCACCTTCCGGCCCTGCGGACA
GCTCTGGACGCCCTACTGGACGAGGAGAGGGAGCAGTACCTGGAAAAGGGCTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(296-448)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(652-713)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)

Helicase conserved C-terminal domain (Helicase_C)

(549-624)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.825

94.708

0.368