Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R5Y34_RS09485 Genome accession   NZ_CP137530
Coordinates   1899869..1900837 (+) Length   322 a.a.
NCBI ID   WP_002226764.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894869..1905837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS09470 - 1894992..1895138 (-) 147 WP_002240086.1 hypothetical protein -
  R5Y34_RS09475 fetA 1895900..1898041 (+) 2142 WP_002248370.1 TonB-dependent siderophore receptor FetA/FrpB -
  R5Y34_RS09480 - 1898740..1899705 (+) 966 WP_002248553.1 siderophore ABC transporter substrate-binding protein -
  R5Y34_RS09485 ceuB 1899869..1900837 (+) 969 WP_002226764.1 ABC transporter permease Machinery gene
  R5Y34_RS09490 - 1900827..1901801 (+) 975 WP_002226765.1 iron chelate uptake ABC transporter family permease subunit -
  R5Y34_RS09495 - 1901846..1902472 (+) 627 WP_154074395.1 FmdE family protein -
  R5Y34_RS09500 - 1902555..1903313 (+) 759 WP_002226767.1 ABC transporter ATP-binding protein -
  R5Y34_RS09505 - 1903613..1904830 (+) 1218 WP_002248372.1 YadA C-terminal domain-containing protein -
  R5Y34_RS09510 - 1904896..1905234 (-) 339 WP_002218119.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34409.68 Da        Isoelectric Point: 10.0891

>NTDB_id=822140 R5Y34_RS09485 WP_002226764.1 1899869..1900837(+) (ceuB) [Neisseria meningitidis strain EXNM678]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
ENEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=822140 R5Y34_RS09485 WP_002226764.1 1899869..1900837(+) (ceuB) [Neisseria meningitidis strain EXNM678]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTATTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTATCCGACAGCCAGCAGGTCATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCTATGGCGGTGGCGGGCATGATTATGCAGATTCTGATGCGTAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGTCAGAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTAATCGGGATGCTGGTGTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGGCTGATTATTGTAGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388