Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QFX63_RS07315 Genome accession   NZ_CP123741
Coordinates   1540346..1541416 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1535346..1546416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX63_RS07275 gcvPA 1535523..1536869 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX63_RS07280 gcvT 1536889..1537980 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX63_RS07285 - 1538139..1538663 (-) 525 WP_001015119.1 shikimate kinase -
  QFX63_RS07290 - 1538653..1538799 (-) 147 WP_001789879.1 hypothetical protein -
  QFX63_RS07295 comGF 1538896..1539393 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX63_RS07300 comGE 1539311..1539610 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX63_RS07305 comGD 1539597..1540043 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX63_RS07310 comGC 1540021..1540332 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX63_RS07315 comGB 1540346..1541416 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX63_RS07320 comGA 1541388..1542362 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX63_RS07325 - 1542414..1543037 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX63_RS07330 - 1543034..1543363 (-) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX63_RS07335 - 1543363..1544349 (-) 987 WP_000161314.1 ROK family glucokinase -
  QFX63_RS07340 - 1544346..1544549 (-) 204 WP_000087561.1 YqgQ family protein -
  QFX63_RS07345 - 1544530..1545993 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=822100 QFX63_RS07315 WP_000776422.1 1540346..1541416(-) (comGB) [Staphylococcus aureus strain 2.2]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=822100 QFX63_RS07315 WP_000776422.1 1540346..1541416(-) (comGB) [Staphylococcus aureus strain 2.2]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1