Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QFX50_RS11120 Genome accession   NZ_CP123740
Coordinates   2283128..2284198 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2278128..2289198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS11080 gcvPA 2278305..2279651 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QFX50_RS11085 gcvT 2279671..2280762 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QFX50_RS11090 - 2280921..2281445 (-) 525 WP_001015119.1 shikimate kinase -
  QFX50_RS11095 - 2281435..2281581 (-) 147 WP_001789879.1 hypothetical protein -
  QFX50_RS11100 comGF 2281678..2282175 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  QFX50_RS11105 comGE 2282093..2282392 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QFX50_RS11110 comGD 2282379..2282825 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  QFX50_RS11115 comGC 2282803..2283114 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QFX50_RS11120 comGB 2283128..2284198 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  QFX50_RS11125 comGA 2284170..2285144 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  QFX50_RS11130 - 2285196..2285819 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QFX50_RS11135 - 2285816..2286145 (-) 330 WP_304984508.1 MTH1187 family thiamine-binding protein -
  QFX50_RS11140 - 2286145..2287131 (-) 987 WP_000161314.1 ROK family glucokinase -
  QFX50_RS11145 - 2287128..2287331 (-) 204 WP_000087561.1 YqgQ family protein -
  QFX50_RS11150 - 2287312..2288775 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=822065 QFX50_RS11120 WP_000776422.1 2283128..2284198(-) (comGB) [Staphylococcus aureus strain 2.3b]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=822065 QFX50_RS11120 WP_000776422.1 2283128..2284198(-) (comGB) [Staphylococcus aureus strain 2.3b]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1