Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R9C51_RS05925 Genome accession   NZ_AP026921
Coordinates   1147655..1148725 (+) Length   356 a.a.
NCBI ID   WP_050232708.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142655..1153725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS05910 (PC0027_11600) ylqF 1143978..1144829 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  R9C51_RS05915 (PC0027_11610) - 1144816..1145595 (+) 780 WP_000201142.1 ribonuclease HII -
  R9C51_RS05920 (PC0027_11620) - 1145611..1147161 (+) 1551 WP_000392542.1 ClC family H(+)/Cl(-) exchange transporter -
  R9C51_RS05925 (PC0027_11630) xerS 1147655..1148725 (+) 1071 WP_050232708.1 tyrosine recombinase XerS Machinery gene
  R9C51_RS05930 (PC0027_11640) - 1148798..1149787 (-) 990 WP_000873987.1 lipoate--protein ligase -
  R9C51_RS05935 (PC0027_11650) lpdA 1149851..1151554 (-) 1704 WP_001162938.1 dihydrolipoyl dehydrogenase -
  R9C51_RS05940 (PC0027_11660) - 1151600..1152643 (-) 1044 WP_000752697.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41149.29 Da        Isoelectric Point: 9.6949

>NTDB_id=82194 R9C51_RS05925 WP_050232708.1 1147655..1148725(+) (xerS) [Streptococcus pneumoniae strain PZ900700027]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMPKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDIL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=82194 R9C51_RS05925 WP_050232708.1 1147655..1148725(+) (xerS) [Streptococcus pneumoniae strain PZ900700027]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGCCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACTTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTGGATATTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.157

100

0.992

Multiple sequence alignment