Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QCL51_RS17995 Genome accession   NZ_CP123734
Coordinates   3910468..3911103 (-) Length   211 a.a.
NCBI ID   WP_031322710.1    Uniprot ID   A0A1X1A0J8
Organism   Pseudomonas sp. LTR0     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3905468..3916103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QCL51_RS17965 (QCL51_17955) murB 3906565..3907584 (-) 1020 WP_021784974.1 UDP-N-acetylmuramate dehydrogenase -
  QCL51_RS17970 (QCL51_17960) - 3907581..3908045 (-) 465 WP_019752229.1 low molecular weight protein-tyrosine-phosphatase -
  QCL51_RS17975 (QCL51_17965) kdsB 3908045..3908809 (-) 765 WP_021784973.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QCL51_RS17980 (QCL51_17970) - 3908806..3908991 (-) 186 WP_003247142.1 Trm112 family protein -
  QCL51_RS17985 (QCL51_17975) lpxK 3909036..3910037 (-) 1002 WP_021784972.1 tetraacyldisaccharide 4'-kinase -
  QCL51_RS17990 (QCL51_17980) - 3910037..3910471 (-) 435 WP_021784971.1 biopolymer transporter ExbD -
  QCL51_RS17995 (QCL51_17985) exbB 3910468..3911103 (-) 636 WP_031322710.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QCL51_RS18000 (QCL51_17990) comA 3913226..3915439 (-) 2214 WP_021784804.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QCL51_RS18005 (QCL51_17995) - 3915582..3916088 (+) 507 Protein_3520 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22857.14 Da        Isoelectric Point: 7.3616

>NTDB_id=821923 QCL51_RS17995 WP_031322710.1 3910468..3911103(-) (exbB) [Pseudomonas sp. LTR0]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=821923 QCL51_RS17995 WP_031322710.1 3910468..3911103(-) (exbB) [Pseudomonas sp. LTR0]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTAAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGGCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATTTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAT
TCGCGTCACGGTCGGGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGTACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGTATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGTCGCATTGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGGGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1A0J8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.905

99.526

0.815