Detailed information NTG0821877

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QFW99_RS15860
• Genome accession: NZ_CP123642
• Coordinates: 3082071..3082871 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain KpBSB53
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3077071..3087871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QFW99_RS15825 (QFW99_15825)	gspH	3077227..3077742 (+)	516	WP_004213437.1	type II secretion system minor pseudopilin GspH	-
QFW99_RS15830 (QFW99_15830)	gspI	3077739..3078104 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
QFW99_RS15835 (QFW99_15835)	gspJ	3078101..3078697 (+)	597	WP_004145893.1	type II secretion system minor pseudopilin GspJ	-
QFW99_RS15840 (QFW99_15840)	gspK	3078694..3079680 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
QFW99_RS15845 (QFW99_15845)	gspL	3079667..3080860 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
QFW99_RS15850 (QFW99_15850)	-	3080853..3081338 (+)	486	WP_004145896.1	type II secretion system protein M	-
QFW99_RS15855 (QFW99_15855)	-	3081328..3082074 (+)	747	WP_004145897.1	type II secretion system protein N	-
QFW99_RS15860 (QFW99_15860)	pilD	3082071..3082871 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
QFW99_RS15865 (QFW99_15865)	hrpB	3082919..3085348 (-)	2430	WP_032416684.1	ATP-dependent helicase HrpB	-
QFW99_RS15870 (QFW99_15870)	thpR	3085421..3085957 (+)	537	WP_032416682.1	RNA 2',3'-cyclic phosphodiesterase	-
QFW99_RS15875 (QFW99_15875)	sfsA	3085957..3086673 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QFW99_RS15880 (QFW99_15880)	dksA	3086836..3087291 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=821877 QFW99_RS15860 WP_004191960.1 3082071..3082871(+) (pilD) [Klebsiella pneumoniae strain KpBSB53]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=821877 QFW99_RS15860 WP_004191960.1 3082071..3082871(+) (pilD) [Klebsiella pneumoniae strain KpBSB53]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421