Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R5022_RS12170 Genome accession   NZ_CP137514
Coordinates   2602296..2603240 (+) Length   314 a.a.
NCBI ID   WP_042852633.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0170     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2597296..2608240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5022_RS12140 (R5022_12140) parA 2597533..2598171 (+) 639 WP_042852628.1 ParA family partition ATPase -
  R5022_RS12145 (R5022_12145) - 2598168..2598431 (+) 264 WP_042852650.1 hypothetical protein -
  R5022_RS12150 (R5022_12150) - 2598428..2598973 (+) 546 WP_042852629.1 DUF2840 domain-containing protein -
  R5022_RS12155 (R5022_12155) - 2598970..2599569 (+) 600 WP_042852630.1 S26 family signal peptidase -
  R5022_RS12160 (R5022_12160) - 2599566..2600021 (+) 456 WP_079383355.1 hypothetical protein -
  R5022_RS12165 (R5022_12165) - 2600018..2602003 (+) 1986 WP_042852631.1 relaxase/mobilization nuclease domain-containing protein -
  R5022_RS12170 (R5022_12170) ceuB 2602296..2603240 (+) 945 WP_042852633.1 ABC transporter permease Machinery gene
  R5022_RS12175 (R5022_12175) - 2603237..2604187 (+) 951 WP_042852634.1 iron chelate uptake ABC transporter family permease subunit -
  R5022_RS12180 (R5022_12180) - 2604184..2604960 (+) 777 WP_042852635.1 ABC transporter ATP-binding protein -
  R5022_RS12185 (R5022_12185) - 2604957..2605964 (+) 1008 WP_042852636.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33607.66 Da        Isoelectric Point: 9.8141

>NTDB_id=821871 R5022_RS12170 WP_042852633.1 2602296..2603240(+) (ceuB) [Pseudomonas aeruginosa strain HPA0170]
MARARLFYLFGFLCIASLFVGVKQLSWGQAYTLSDDAWLTLTVSRIPRLAALILTGVGLSICGVILQQIVRNKFVEPATS
GGLDAAKLGILLSLVLAPGLGTMGKMLFALLFCFSASMLYVAIIRRIKFKNTVLVPVVGLMYGSVLSAVAEFYAYRHNIV
QSMQGWLLGDFSKIIQGNYEIIYLILPIVALTYLFAHRFTVMGMGEDAATSLGLSYSRTAALGLLLVAVTVSACVIAVGA
IPFVGLVIPNLVALRCGENLRRTLPIVALAGASLLLVCDIVGRLLIFPFEVPIGMTAGSLGGLLFLVLLLGKLK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=821871 R5022_RS12170 WP_042852633.1 2602296..2603240(+) (ceuB) [Pseudomonas aeruginosa strain HPA0170]
GTGGCTCGTGCACGTCTTTTCTATTTGTTTGGATTCCTATGCATCGCGTCGCTATTCGTCGGTGTGAAGCAATTGTCGTG
GGGGCAGGCTTATACGCTGTCCGATGATGCTTGGCTAACACTGACAGTGAGTCGTATTCCACGCTTGGCAGCGCTCATTC
TGACCGGAGTGGGACTGTCTATTTGCGGTGTGATTCTGCAGCAGATTGTTCGGAACAAATTTGTAGAGCCTGCGACGTCT
GGTGGTTTGGACGCGGCGAAACTGGGAATTCTGCTCTCGTTGGTGTTGGCGCCAGGGCTGGGAACCATGGGCAAGATGCT
GTTCGCGCTCTTGTTTTGCTTCTCGGCGAGCATGCTCTACGTCGCAATCATCCGGCGCATAAAGTTCAAGAACACGGTAT
TGGTTCCCGTCGTGGGGTTGATGTACGGCAGCGTCTTGAGTGCCGTCGCGGAGTTTTATGCCTATCGCCACAATATTGTG
CAGAGCATGCAAGGCTGGCTATTGGGTGATTTCTCAAAGATCATCCAAGGCAATTACGAGATCATCTATTTAATCCTCCC
CATCGTTGCGCTCACCTACCTGTTCGCACATCGTTTCACTGTAATGGGGATGGGGGAAGACGCAGCAACCAGCTTGGGCT
TGAGCTATTCGCGGACTGCGGCATTGGGCTTGCTGCTGGTGGCCGTCACCGTCTCTGCCTGCGTCATTGCCGTAGGGGCC
ATTCCCTTCGTCGGTTTGGTGATCCCCAACCTGGTGGCGCTGCGCTGTGGAGAGAACCTACGCCGAACCCTGCCTATCGT
GGCTCTGGCGGGTGCGTCACTTCTGCTTGTGTGCGACATCGTTGGCCGTCTTCTGATCTTTCCGTTTGAAGTGCCGATCG
GCATGACGGCAGGCAGCCTGGGCGGCTTGCTGTTCCTTGTGCTCCTGCTGGGGAAACTCAAATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(11-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

46.844

95.86

0.449