Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R5022_RS08225 Genome accession   NZ_CP137514
Coordinates   1768598..1768963 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain HPA0170     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1763598..1773963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5022_RS08195 (R5022_08195) pyrR 1764220..1764732 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  R5022_RS08200 (R5022_08200) ruvX 1764844..1765278 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  R5022_RS08205 (R5022_08205) - 1765278..1765847 (-) 570 WP_033991523.1 YqgE/AlgH family protein -
  R5022_RS08210 (R5022_08210) - 1765896..1766789 (-) 894 WP_003084580.1 TonB family protein -
  R5022_RS08215 (R5022_08215) gshB 1766936..1767889 (-) 954 WP_003100943.1 glutathione synthase -
  R5022_RS08220 (R5022_08220) pilG 1768144..1768551 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  R5022_RS08225 (R5022_08225) pilH 1768598..1768963 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  R5022_RS08230 (R5022_08230) - 1769014..1769550 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  R5022_RS08235 (R5022_08235) pilJ 1769635..1771683 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  R5022_RS08240 (R5022_08240) pilK 1771744..1772619 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=821860 R5022_RS08225 WP_003084587.1 1768598..1768963(+) (pilH) [Pseudomonas aeruginosa strain HPA0170]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=821860 R5022_RS08225 WP_003084587.1 1768598..1768963(+) (pilH) [Pseudomonas aeruginosa strain HPA0170]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364