Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OU418_RS13065 Genome accession   NZ_CP123621
Coordinates   2509582..2510619 (-) Length   345 a.a.
NCBI ID   WP_041850016.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2504582..2515619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS13015 (OU418_13015) tasA 2504680..2505465 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  OU418_RS13020 (OU418_13020) sipW 2505529..2506101 (-) 573 WP_003246088.1 signal peptidase I SipW -
  OU418_RS13025 (OU418_13025) tapA 2506085..2506846 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  OU418_RS13030 (OU418_13030) yqzG 2507118..2507444 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  OU418_RS13035 (OU418_13035) spoIITA 2507486..2507665 (-) 180 WP_003230176.1 YqzE family protein -
  OU418_RS13040 (OU418_13040) comGG 2507736..2508110 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  OU418_RS13045 (OU418_13045) comGF 2508111..2508494 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  OU418_RS13050 (OU418_13050) comGE 2508520..2508867 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  OU418_RS13055 (OU418_13055) comGD 2508851..2509282 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  OU418_RS13060 (OU418_13060) comGC 2509272..2509568 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  OU418_RS13065 (OU418_13065) comGB 2509582..2510619 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  OU418_RS13070 (OU418_13070) comGA 2510606..2511676 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  OU418_RS13075 (OU418_13075) corA 2512087..2513040 (-) 954 WP_029317911.1 magnesium transporter CorA -
  OU418_RS13080 (OU418_13080) yqhB 2513183..2514511 (+) 1329 WP_041850018.1 hemolysin family protein -
  OU418_RS13085 (OU418_13085) rsbRD 2514564..2515400 (-) 837 WP_041850019.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39728.18 Da        Isoelectric Point: 9.6257

>NTDB_id=821769 OU418_RS13065 WP_041850016.1 2509582..2510619(-) (comGB) [Bacillus subtilis strain RLI2019]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAALILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=821769 OU418_RS13065 WP_041850016.1 2509582..2510619(-) (comGB) [Bacillus subtilis strain RLI2019]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATTCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGCTGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.381

93.623

0.93