Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R5031_RS16075 Genome accession   NZ_CP137512
Coordinates   3455365..3455730 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain HPA0271     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3450365..3460730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5031_RS16060 (R5031_16060) pilK 3451709..3452584 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  R5031_RS16065 (R5031_16065) pilJ 3452645..3454693 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  R5031_RS16070 (R5031_16070) - 3454778..3455314 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  R5031_RS16075 (R5031_16075) pilH 3455365..3455730 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  R5031_RS16080 (R5031_16080) pilG 3455777..3456184 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  R5031_RS16085 (R5031_16085) gshB 3456439..3457392 (+) 954 WP_003100943.1 glutathione synthase -
  R5031_RS16090 (R5031_16090) - 3457539..3458432 (+) 894 WP_003162015.1 energy transducer TonB -
  R5031_RS16095 (R5031_16095) - 3458481..3459050 (+) 570 WP_010793542.1 YqgE/AlgH family protein -
  R5031_RS16100 (R5031_16100) ruvX 3459050..3459484 (+) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  R5031_RS16105 (R5031_16105) pyrR 3459596..3460108 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=821763 R5031_RS16075 WP_003084587.1 3455365..3455730(-) (pilH) [Pseudomonas aeruginosa strain HPA0271]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=821763 R5031_RS16075 WP_003084587.1 3455365..3455730(-) (pilH) [Pseudomonas aeruginosa strain HPA0271]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364