Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OU418_RS10140 Genome accession   NZ_CP123621
Coordinates   2038271..2039401 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2036906..2059687 2038271..2039401 within 0


Gene organization within MGE regions


Location: 2036906..2059687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS10130 (OU418_10125) - 2036906..2037280 (+) 375 WP_021481445.1 YoqO family protein -
  OU418_RS21910 (OU418_10130) - 2038061..2038138 (+) 78 WP_227057947.1 phage holin -
  OU418_RS10140 (OU418_10135) rapC 2038271..2039401 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  OU418_RS10145 (OU418_10140) - 2039391..2039534 (+) 144 WP_153801665.1 hypothetical protein -
  OU418_RS10150 (OU418_10145) - 2039688..2039888 (-) 201 WP_021481449.1 hypothetical protein -
  OU418_RS10155 (OU418_10150) - 2040110..2040484 (-) 375 Protein_1951 UV damage repair protein UvrX -
  OU418_RS10160 (OU418_10155) - 2040482..2040637 (-) 156 Protein_1952 T7SS effector LXG polymorphic toxin -
  OU418_RS10165 (OU418_10160) yobM 2040738..2041295 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  OU418_RS10170 (OU418_10165) aoxN 2041423..2042859 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  OU418_RS10175 (OU418_10170) csaA 2043109..2043441 (-) 333 WP_032725963.1 chaperone CsaA -
  OU418_RS10180 (OU418_10175) yobQ 2043506..2044231 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  OU418_RS10185 (OU418_10180) yobR 2044246..2044986 (-) 741 WP_041849922.1 N-acetyltransferase -
  OU418_RS10190 (OU418_10185) yobS 2045064..2045639 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  OU418_RS10195 (OU418_10190) yobT 2045645..2046346 (-) 702 WP_015714087.1 MBL fold metallo-hydrolase -
  OU418_RS10200 (OU418_10195) yobU 2046422..2046904 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  OU418_RS10205 (OU418_10200) yobV 2046958..2047896 (-) 939 WP_015714088.1 YafY family protein -
  OU418_RS10210 (OU418_10205) csk22 2048101..2048646 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  OU418_RS10215 (OU418_10210) czrA 2048673..2048996 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  OU418_RS10220 (OU418_10215) yocA 2049191..2049868 (+) 678 WP_014480011.1 lysozyme family protein -
  OU418_RS10225 (OU418_10220) ctaM 2049958..2050494 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  OU418_RS10230 (OU418_10225) yocB 2050631..2051413 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  OU418_RS10235 (OU418_10230) yocC 2051584..2052081 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  OU418_RS10240 (OU418_10235) yocD 2052145..2053122 (+) 978 WP_015714091.1 S66 peptidase family protein -
  OU418_RS10245 (OU418_10240) desE 2053285..2054343 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  OU418_RS10250 (OU418_10245) desK 2054463..2055575 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  OU418_RS10255 (OU418_10250) desR 2055594..2056193 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  OU418_RS10260 (OU418_10255) walN 2056801..2057664 (-) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  OU418_RS10265 (OU418_10260) recQ 2057912..2059687 (-) 1776 WP_015714092.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=821757 OU418_RS10140 WP_021481447.1 2038271..2039401(+) (rapC) [Bacillus subtilis strain RLI2019]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=821757 OU418_RS10140 WP_021481447.1 2038271..2039401(+) (rapC) [Bacillus subtilis strain RLI2019]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455