Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   OU418_RS04460 Genome accession   NZ_CP123621
Coordinates   882769..883563 (+) Length   264 a.a.
NCBI ID   WP_029726844.1    Uniprot ID   -
Organism   Bacillus subtilis strain RLI2019     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 877769..888563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU418_RS04430 (OU418_04430) sxzA 878608..879639 (+) 1032 WP_003233568.1 iron chelate uptake ABC transporter family permease subunit -
  OU418_RS04435 (OU418_04435) yfhB 879754..880635 (+) 882 WP_041851150.1 PhzF family phenazine biosynthesis isomerase -
  OU418_RS04440 (OU418_04440) yfhC 880723..881307 (+) 585 WP_015252518.1 NAD(P)H nitroreductase -
  OU418_RS04445 (OU418_04445) yfhD 881346..881537 (-) 192 WP_041851149.1 YfhD family protein -
  OU418_RS04450 (OU418_04450) yfhE 881604..881714 (-) 111 WP_003223230.1 YfhE family protein -
  OU418_RS04455 (OU418_04455) yfhF 881769..882680 (-) 912 WP_041851148.1 TIGR01777 family oxidoreductase -
  OU418_RS04460 (OU418_04460) recX 882769..883563 (+) 795 WP_029726844.1 recombination regulator RecX Regulator
  OU418_RS04465 (OU418_04465) yfhH 883565..883879 (+) 315 WP_003244592.1 YfhH family protein -
  OU418_RS04470 (OU418_04470) yfhI 884022..885215 (+) 1194 WP_003243500.1 MFS transporter -
  OU418_RS04475 (OU418_04475) sspK 885247..885399 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  OU418_RS04480 (OU418_04480) yfhJ 885524..885793 (+) 270 WP_003243789.1 YfhJ family protein -
  OU418_RS04485 (OU418_04485) yfhK 885938..886456 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  OU418_RS04490 (OU418_04490) spdL 886541..886873 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  OU418_RS04495 (OU418_04495) ephM 886860..887720 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31047.25 Da        Isoelectric Point: 6.6686

>NTDB_id=821733 OU418_RS04460 WP_029726844.1 882769..883563(+) (recX) [Bacillus subtilis strain RLI2019]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=821733 OU418_RS04460 WP_029726844.1 882769..883563(+) (recX) [Bacillus subtilis strain RLI2019]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGTGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.621

100

0.996