Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R5024_RS09265 Genome accession   NZ_CP137510
Coordinates   1987469..1987798 (+) Length   109 a.a.
NCBI ID   WP_076938892.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0310     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982469..1992798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5024_RS09250 (R5024_09250) - 1983084..1984046 (+) 963 WP_016253165.1 UDP-glucose 4-epimerase family protein -
  R5024_RS09255 (R5024_09255) - 1984046..1985083 (+) 1038 WP_003452706.1 MraY family glycosyltransferase -
  R5024_RS09260 (R5024_09260) - 1985281..1987278 (+) 1998 WP_003122257.1 polysaccharide biosynthesis protein -
  R5024_RS09265 (R5024_09265) comEA/comE1 1987469..1987798 (+) 330 WP_076938892.1 ComEA family DNA-binding protein Machinery gene
  R5024_RS09275 (R5024_09275) - 1988015..1989211 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  R5024_RS09280 (R5024_09280) uvrB 1989399..1991411 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11379.36 Da        Isoelectric Point: 8.0459

>NTDB_id=821645 R5024_RS09265 WP_076938892.1 1987469..1987798(+) (comEA/comE1) [Pseudomonas aeruginosa strain HPA0310]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAVLIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=821645 R5024_RS09265 WP_076938892.1 1987469..1987798(+) (comEA/comE1) [Pseudomonas aeruginosa strain HPA0310]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGTCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385