Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R9C51_RS00725 Genome accession   NZ_AP026921
Coordinates   113683..114453 (+) Length   256 a.a.
NCBI ID   WP_000616158.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 108683..119453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS00710 (PC0027_01360) - 110738..111175 (+) 438 WP_000076485.1 CoA-binding protein -
  R9C51_RS00715 (PC0027_01370) - 111358..112368 (-) 1011 WP_000009158.1 YeiH family protein -
  R9C51_RS00720 (PC0027_01390) - 112517..113686 (+) 1170 WP_000366369.1 pyridoxal phosphate-dependent aminotransferase -
  R9C51_RS00725 (PC0027_01400) recO 113683..114453 (+) 771 WP_000616158.1 DNA repair protein RecO Machinery gene
  R9C51_RS00730 (PC0027_01410) plsX 114450..115442 (+) 993 WP_000717457.1 phosphate acyltransferase PlsX -
  R9C51_RS00735 (PC0027_01420) - 115448..115681 (+) 234 WP_000659556.1 acyl carrier protein -
  R9C51_RS00740 - 115718..116018 (+) 301 Protein_140 transposase family protein -
  R9C51_RS00745 blpU 116221..116451 (+) 231 Protein_141 bacteriocin-like peptide BlpU -
  R9C51_RS00750 (PC0027_01430) - 116454..116579 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R9C51_RS00755 (PC0027_01440) comA 117166..119319 (+) 2154 WP_000668277.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29734.30 Da        Isoelectric Point: 5.6115

>NTDB_id=82153 R9C51_RS00725 WP_000616158.1 113683..114453(+) (recO) [Streptococcus pneumoniae strain PZ900700027]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKCMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=82153 R9C51_RS00725 WP_000616158.1 113683..114453(+) (recO) [Streptococcus pneumoniae strain PZ900700027]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTTGTCAAAATTTT
TACAGAGCAGGTTGGCAAATGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

98.828

100

0.988

Multiple sequence alignment