Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QFC96_RS08735 Genome accession   NZ_CP123581
Coordinates   1667990..1669798 (+) Length   602 a.a.
NCBI ID   WP_215499420.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain ZHA1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1662990..1674798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS08725 (QFC96_08725) - 1665171..1666409 (-) 1239 WP_081038316.1 nucleoside transporter C-terminal domain-containing protein -
  QFC96_RS08730 (QFC96_08730) - 1666588..1667730 (-) 1143 WP_338405152.1 LCP family protein -
  QFC96_RS08735 (QFC96_08735) pepF 1667990..1669798 (+) 1809 WP_215499420.1 oligoendopeptidase F Regulator
  QFC96_RS08740 (QFC96_08740) - 1669839..1670615 (-) 777 WP_065825914.1 metal ABC transporter permease -
  QFC96_RS08745 (QFC96_08745) - 1670650..1671330 (-) 681 WP_283534102.1 ATP-binding cassette domain-containing protein -
  QFC96_RS08750 (QFC96_08750) - 1671327..1672214 (-) 888 WP_253733600.1 zinc ABC transporter substrate-binding protein -
  QFC96_RS08755 (QFC96_08755) - 1672488..1673069 (-) 582 WP_283534103.1 hypothetical protein -
  QFC96_RS08760 (QFC96_08760) - 1673175..1674716 (-) 1542 WP_004265146.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67327.33 Da        Isoelectric Point: 4.5897

>NTDB_id=821392 QFC96_RS08735 WP_215499420.1 1667990..1669798(+) (pepF) [Latilactobacillus curvatus strain ZHA1]
MSTQQLPIRDAVPEKLTWDLTTIFKNDAAFEVAFKKVKTQLPTLKTLDRPFESADQLVATIEQILATFRQLETIYVYASM
KNDQDTANATYQGYQAQVDSLAAEVSAAAAFLEPAILAIPAGQLADWLTKTPNLAVYSHFIQTITDSRDHVLSGQEEALL
AAAGDIFSAASQTFSVLDNSDLQFPEVTDENGQTLQLSDGVYSQLLQSTNRSVRQAAFEALYKTYGQFKNTFATTLATEI
KGHNYLAQVHHYDSARQAALAPKAIPEAVYTTLVDQVNQHLPLLHRYTELRKKQLNLSELHMFDLYTPLLGKPALTYTYE
QAQATAKEALSILGPDYAKQVAHIFDDRLIDVCENQGKRSGAYSGGAYDTNPFILLNWQDDLNNLYTLVHETGHSVHSAF
TRQTQDYVYGDYPIFVAEIASTTNENLLTEYLLQTQSDPKVQAYLLNYYLDGFKGTVFRQTQFAEFEHAMHAAAANGQPL
TAEFMSQQYADINSRYYGPAVVNDPQIALEWTRIPHFYMNYYVYQYATGFAAATTLTNGISTKQPGALDHYLDYLKAGSS
AYPIEIMQQAGVDMTSADYLERAFAVFEERLDQLEALLANLN

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=821392 QFC96_RS08735 WP_215499420.1 1667990..1669798(+) (pepF) [Latilactobacillus curvatus strain ZHA1]
ATGTCAACTCAACAACTCCCCATCCGCGATGCTGTTCCAGAAAAGCTCACATGGGACTTAACCACGATTTTCAAAAATGA
TGCAGCTTTTGAAGTAGCCTTTAAGAAAGTTAAAACGCAATTACCCACACTCAAAACACTTGATCGTCCGTTTGAATCGG
CTGATCAATTAGTCGCTACAATCGAACAAATCTTAGCCACTTTCCGCCAGCTCGAAACAATTTACGTTTATGCTAGCATG
AAAAATGATCAGGATACTGCTAACGCAACTTATCAAGGCTATCAAGCCCAAGTGGACAGCTTAGCGGCCGAAGTTTCAGC
AGCAGCGGCCTTTTTAGAGCCTGCGATTCTTGCTATTCCGGCTGGGCAATTAGCAGATTGGCTTACCAAGACGCCTAATT
TAGCAGTTTACAGCCATTTCATTCAAACCATTACCGATAGTCGAGACCATGTCTTATCTGGGCAAGAAGAAGCCTTGTTA
GCTGCTGCCGGAGATATCTTCAGTGCTGCTAGTCAAACCTTCAGCGTCTTAGACAACTCGGATTTACAATTCCCAGAAGT
GACTGACGAAAACGGACAAACGTTGCAGCTTTCAGATGGGGTCTACAGCCAACTTTTACAATCAACCAACCGATCAGTCC
GCCAAGCAGCCTTCGAAGCACTTTACAAAACTTATGGTCAATTCAAAAATACATTTGCGACGACGCTTGCCACTGAAATC
AAAGGTCATAATTACTTAGCTCAAGTCCATCACTACGATAGTGCACGCCAAGCAGCGCTAGCACCCAAAGCAATTCCAGA
AGCCGTCTATACAACCTTGGTTGATCAAGTGAACCAACACTTACCACTTTTACATCGCTATACTGAATTACGCAAAAAGC
AACTTAATTTATCTGAATTACACATGTTTGATCTCTACACACCACTTCTAGGAAAACCCGCATTAACCTACACTTATGAG
CAGGCGCAAGCAACTGCCAAAGAAGCATTGTCGATCCTAGGACCCGATTATGCCAAACAAGTTGCCCATATTTTTGATGA
CCGCTTAATCGATGTTTGTGAAAACCAAGGGAAACGGAGTGGCGCCTATTCTGGCGGCGCTTATGACACCAATCCCTTCA
TTTTATTAAACTGGCAAGATGATTTAAACAACTTATACACATTGGTCCATGAAACGGGGCATAGTGTCCACAGCGCCTTC
ACCCGTCAGACCCAAGATTATGTTTATGGCGACTATCCAATTTTCGTGGCCGAAATTGCGTCAACAACCAATGAAAATCT
CTTAACGGAATATTTATTGCAAACACAGTCTGATCCTAAGGTCCAGGCCTATCTATTGAACTACTATTTGGATGGTTTTA
AAGGCACTGTTTTCCGTCAAACGCAATTCGCTGAGTTCGAACATGCGATGCATGCTGCCGCTGCCAATGGTCAGCCACTA
ACTGCCGAGTTCATGTCACAACAATATGCGGACATTAATAGCCGCTACTACGGACCTGCCGTCGTTAACGATCCACAGAT
CGCCCTTGAATGGACTCGGATTCCACATTTCTATATGAACTATTATGTTTACCAATACGCAACCGGCTTTGCTGCTGCAA
CGACTCTCACTAACGGCATTAGCACCAAACAGCCCGGTGCTCTCGATCACTATTTAGACTACCTAAAAGCTGGGAGCTCC
GCCTACCCAATTGAAATTATGCAACAAGCCGGCGTCGATATGACGAGTGCCGACTATCTCGAACGCGCTTTTGCAGTTTT
CGAAGAACGTCTGGATCAACTCGAAGCCCTACTTGCTAACCTAAATTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.992

98.173

0.54