Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   QFC96_RS00885 Genome accession   NZ_CP123581
Coordinates   173679..174386 (-) Length   235 a.a.
NCBI ID   WP_081038321.1    Uniprot ID   A0AAJ0PCE4
Organism   Latilactobacillus curvatus strain ZHA1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168679..179386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFC96_RS00880 (QFC96_00880) rpoC 169965..173606 (+) 3642 WP_004270200.1 DNA-directed RNA polymerase subunit beta' -
  QFC96_RS00885 (QFC96_00885) comC 173679..174386 (-) 708 WP_081038321.1 A24 family peptidase Machinery gene
  QFC96_RS00890 (QFC96_00890) rpsL 174657..175070 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  QFC96_RS00895 (QFC96_00895) rpsG 175160..175630 (+) 471 WP_054644265.1 30S ribosomal protein S7 -
  QFC96_RS00900 (QFC96_00900) fusA 175722..177809 (+) 2088 WP_004270213.1 elongation factor G -
  QFC96_RS00905 (QFC96_00905) rsgA 178454..179218 (-) 765 WP_346772250.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26544.85 Da        Isoelectric Point: 6.9137

>NTDB_id=821364 QFC96_RS00885 WP_081038321.1 173679..174386(-) (comC) [Latilactobacillus curvatus strain ZHA1]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLHHPVVLALVGRRPIPFVPYISYGVLIVLFIANT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=821364 QFC96_RS00885 WP_081038321.1 173679..174386(-) (comC) [Latilactobacillus curvatus strain ZHA1]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACTGTTTGTGCTTGGCG
TTGGCCACTCGGTTTATCCATCACATGGCCTGGTTCACGGTGTGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGTTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTATTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCAATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATTGATAGTCTCCACCATCCAGTTGTCCTCGCCTTAGTCGGACGCC
GCCCAATTCCATTTGTCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGCAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489