Detailed information NTG0821350

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: R5023_RS05540
• Genome accession: NZ_CP137504
• Coordinates: 1200383..1201408 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa strain HPA0124
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1195383..1206408

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R5023_RS05515 (R5023_05515)	-	1195573..1195890 (-)	318	WP_003097288.1	tetratricopeptide repeat protein	-
R5023_RS05520 (R5023_05520)	trkA	1196038..1197411 (-)	1374	WP_003111375.1	Trk system potassium transporter TrkA	-
R5023_RS05525 (R5023_05525)	rsmB	1197438..1198742 (-)	1305	WP_023092224.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
R5023_RS05530 (R5023_05530)	fmt	1198739..1199683 (-)	945	WP_031756537.1	methionyl-tRNA formyltransferase	-
R5023_RS05535 (R5023_05535)	def	1199738..1200244 (-)	507	WP_003107059.1	peptide deformylase	-
R5023_RS05540 (R5023_05540)	tsaP	1200383..1201408 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
R5023_RS05545 (R5023_05545)	dprA	1201543..1202631 (+)	1089	WP_033989019.1	DNA-processing protein DprA	Machinery gene
R5023_RS05550 (R5023_05550)	-	1202672..1203229 (+)	558	WP_003097300.1	L-threonylcarbamoyladenylate synthase	-
R5023_RS05555 (R5023_05555)	-	1203239..1204216 (-)	978	WP_033938270.1	NADPH:quinone reductase	-
R5023_RS05560 (R5023_05560)	hemF	1204407..1205324 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
R5023_RS05565 (R5023_05565)	aroE	1205382..1206206 (+)	825	WP_003097314.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=821350 R5023_RS05540 WP_003097294.1 1200383..1201408(+) (tsaP) [Pseudomonas aeruginosa strain HPA0124]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=821350 R5023_RS05540 WP_003097294.1 1200383..1201408(+) (tsaP) [Pseudomonas aeruginosa strain HPA0124]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393