Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QEP22_RS05355 Genome accession   NZ_CP123578
Coordinates   933859..934233 (+) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain HyangYak-01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 928859..939233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP22_RS05335 - 929349..930020 (-) 672 WP_043978471.1 response regulator transcription factor -
  QEP22_RS05340 - 930346..931164 (+) 819 WP_028411023.1 phytoene/squalene synthase family protein -
  QEP22_RS05345 - 931200..933149 (-) 1950 WP_165575892.1 FUSC family protein -
  QEP22_RS05350 - 933306..933566 (-) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  QEP22_RS05355 nucA/comI 933859..934233 (+) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QEP22_RS05360 comJ 934269..934676 (+) 408 WP_043978463.1 competence protein ComJ -
  QEP22_RS05365 - 934778..935191 (-) 414 WP_280560737.1 CPBP family intramembrane metalloprotease -
  QEP22_RS05370 helD 935769..938087 (-) 2319 WP_043978457.1 RNA polymerase recycling motor HelD -
  QEP22_RS05375 - 938332..938457 (-) 126 WP_016765178.1 hypothetical protein -
  QEP22_RS05380 - 938597..939112 (-) 516 WP_043978456.1 enoyl-CoA hydratase/isomerase family protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=821299 QEP22_RS05355 WP_223269005.1 933859..934233(+) (nucA/comI) [Priestia megaterium strain HyangYak-01]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=821299 QEP22_RS05355 WP_223269005.1 933859..934233(+) (nucA/comI) [Priestia megaterium strain HyangYak-01]
ATGGGGCATGCGGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAATTATGATGCGACACTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGTACAATTGATCGCGACG
GTGCTGAAGCGAACCGAGAAGAATCCCTGAAAGGATATCCGACAAAAACAGGTTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGCGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645