Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QEP22_RS02445 Genome accession   NZ_CP123578
Coordinates   437148..437570 (+) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain HyangYak-01     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 432148..442570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEP22_RS02420 - 432480..433313 (-) 834 WP_043981381.1 AraC family transcriptional regulator -
  QEP22_RS02425 - 433536..434357 (+) 822 WP_043981380.1 histidine kinase -
  QEP22_RS02430 - 434358..434999 (+) 642 WP_043981379.1 response regulator transcription factor -
  QEP22_RS02435 - 435131..436513 (+) 1383 WP_080781660.1 PepSY domain-containing protein -
  QEP22_RS02440 - 436543..437007 (+) 465 WP_043981377.1 FixH family protein -
  QEP22_RS02445 nucA/comI 437148..437570 (+) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QEP22_RS02450 - 437711..438064 (+) 354 WP_225049451.1 DUF1516 family protein -
  QEP22_RS02455 - 438105..438698 (-) 594 WP_097822801.1 hypothetical protein -
  QEP22_RS02460 - 438853..439560 (-) 708 WP_241771379.1 TetR/AcrR family transcriptional regulator -
  QEP22_RS02465 - 439532..440812 (-) 1281 WP_241771378.1 glycosyltransferase -
  QEP22_RS02470 - 441109..441654 (+) 546 WP_043981374.1 GNAT family N-acetyltransferase -
  QEP22_RS02475 - 441802..442287 (-) 486 WP_043981373.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=821293 QEP22_RS02445 WP_013057949.1 437148..437570(+) (nucA/comI) [Priestia megaterium strain HyangYak-01]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=821293 QEP22_RS02445 WP_013057949.1 437148..437570(+) (nucA/comI) [Priestia megaterium strain HyangYak-01]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATTGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGTATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCTGATAT
TGAATATGTAAAGCCTTCAGACAACCGAGGCGCCGGGTCTTGGATCTCCCATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507