Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QBD33_RS14490 Genome accession   NZ_CP123488
Coordinates   2960549..2961157 (-) Length   202 a.a.
NCBI ID   WP_280555894.1    Uniprot ID   A0AA95FY11
Organism   Kluyvera intermedia strain DW18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955549..2966157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD33_RS14475 (QBD33_14475) helD 2955770..2957824 (-) 2055 WP_280555893.1 DNA helicase IV -
  QBD33_RS14480 (QBD33_14480) - 2957947..2958393 (+) 447 WP_062777495.1 YccF domain-containing protein -
  QBD33_RS14485 (QBD33_14485) yccS 2958413..2960539 (+) 2127 WP_062777496.1 YccS family putative transporter -
  QBD33_RS14490 (QBD33_14490) sxy/tfoX 2960549..2961157 (-) 609 WP_280555894.1 TfoX/Sxy family DNA transformation protein Regulator
  QBD33_RS14495 (QBD33_14495) sulA 2961376..2961885 (+) 510 WP_153744059.1 SOS-induced cell division inhibitor SulA -
  QBD33_RS14500 (QBD33_14500) ompA 2962240..2963295 (+) 1056 WP_062777502.1 porin OmpA -
  QBD33_RS14505 (QBD33_14505) matP 2963383..2963838 (-) 456 WP_280555898.1 macrodomain Ter protein MatP -
  QBD33_RS14510 (QBD33_14510) - 2964023..2965783 (+) 1761 WP_062777506.1 Lon protease family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23345.28 Da        Isoelectric Point: 10.4580

>NTDB_id=821178 QBD33_RS14490 WP_280555894.1 2960549..2961157(-) (sxy/tfoX) [Kluyvera intermedia strain DW18]
MKVISYKRIYQSQEYFAVLGKVRSRALFGGYSLAVDDTVFAMVAEGELYLRMCEKTAIYQTQHSPPLLMLRKRGSSLQLK
YFKVDDALWANKPVLLQLGLFSLEDARREKSHQKHPQRLKDLPNLSFHMELLLHEVGVKDVRALQQMGAKTVWLLLRQKR
KQISSNVLYSLEGAIQGVHAAALPALKRQELEEWVRNRTHKN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=821178 QBD33_RS14490 WP_280555894.1 2960549..2961157(-) (sxy/tfoX) [Kluyvera intermedia strain DW18]
ATGAAGGTAATATCATATAAACGGATTTATCAATCCCAGGAATATTTTGCGGTGTTAGGAAAAGTCAGGTCACGAGCGCT
GTTTGGTGGTTACAGCCTTGCCGTTGACGACACGGTTTTCGCAATGGTTGCGGAGGGGGAGCTGTATTTGAGGATGTGCG
AAAAAACCGCCATTTATCAAACTCAGCACTCGCCGCCATTATTGATGTTACGTAAACGAGGAAGCTCGCTTCAGCTTAAG
TATTTCAAAGTAGATGATGCTCTCTGGGCCAACAAACCTGTTTTATTGCAACTGGGGCTGTTTTCACTAGAGGATGCGCG
ACGTGAAAAGTCCCATCAAAAGCATCCGCAGCGATTAAAAGATTTACCCAATCTCTCTTTTCATATGGAATTGTTGTTGC
ATGAAGTGGGTGTTAAGGATGTCCGGGCGTTGCAACAAATGGGGGCGAAAACGGTGTGGTTGCTTCTTCGTCAAAAACGT
AAACAGATAAGTTCCAATGTCCTTTACTCATTGGAGGGAGCCATTCAGGGTGTGCATGCTGCTGCACTCCCGGCGCTAAA
GCGTCAGGAGCTGGAAGAGTGGGTGCGCAATCGCACCCACAAGAACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

55.224

99.505

0.55