Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R5017_RS18105 Genome accession   NZ_CP137498
Coordinates   3812433..3812762 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA0663     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3807433..3817762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5017_RS18090 (R5017_18090) uvrB 3808820..3810832 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  R5017_RS18095 (R5017_18095) - 3811020..3812216 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  R5017_RS18105 (R5017_18105) comEA/comE1 3812433..3812762 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  R5017_RS18110 (R5017_18110) - 3812953..3814950 (-) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  R5017_RS18115 (R5017_18115) - 3814963..3815988 (-) 1026 WP_023093916.1 MraY family glycosyltransferase -
  R5017_RS18120 (R5017_18120) - 3816089..3817033 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=821174 R5017_RS18105 WP_003091430.1 3812433..3812762(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA0663]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=821174 R5017_RS18105 WP_003091430.1 3812433..3812762(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA0663]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385