Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QAO71_RS04555 Genome accession   NZ_CP123445
Coordinates   943475..944851 (+) Length   458 a.a.
NCBI ID   WP_036990744.1    Uniprot ID   -
Organism   Halopseudomonas sp. SMJS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938475..949851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO71_RS04540 (QAO71_04540) - 940219..941352 (-) 1134 WP_136869223.1 methyltransferase -
  QAO71_RS04545 (QAO71_04545) mscL 941484..941894 (-) 411 WP_036990747.1 large-conductance mechanosensitive channel protein MscL -
  QAO71_RS04550 (QAO71_04550) - 941951..943399 (-) 1449 WP_280165372.1 polyphosphate kinase -
  QAO71_RS04555 (QAO71_04555) radA 943475..944851 (+) 1377 WP_036990744.1 DNA repair protein RadA Machinery gene
  QAO71_RS04560 (QAO71_04560) - 944880..945236 (-) 357 WP_280165373.1 PilZ domain-containing protein -
  QAO71_RS04565 (QAO71_04565) gdhA 945347..946687 (-) 1341 WP_280165374.1 NADP-specific glutamate dehydrogenase -
  QAO71_RS04570 (QAO71_04570) ettA 946960..948624 (-) 1665 WP_280165375.1 energy-dependent translational throttle protein EttA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49062.59 Da        Isoelectric Point: 7.0182

>NTDB_id=821127 QAO71_RS04555 WP_036990744.1 943475..944851(+) (radA) [Halopseudomonas sp. SMJS2]
MAKNKRLYGCTECGATFTKWAGQCGECQAWNTLIETVIDTTPTGGSGGGSRSSNWAGEMAQVKTLAEVSTEEMPRQPSGS
SELDRVLGGGLVSGSVVLIGGDPGIGKSTILLQTLCRLAQNMPALYITGEESQQQVAMRADRLGLPKDQLKVMTETCIES
IVATARREQPKVMVVDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVL
YFEGESDGRLRMLRAVKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRYDAPIPGSVVMSTWEGSRPMLVEVQALVDTS
HLGNPRRVTLGLDQNRLAMLLAVLHRHGGVPTYDQDVFVNVVGGVKVLETAADLALLAAVISSLRNRPLPMDLMVFGELG
LSGEIRPVPSGQERLKEAAKHGFTRAIVPKANAPKESPKGMQVVPVTRLDEALGMLFE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=821127 QAO71_RS04555 WP_036990744.1 943475..944851(+) (radA) [Halopseudomonas sp. SMJS2]
ATGGCGAAGAACAAACGACTCTATGGCTGCACTGAGTGCGGCGCTACCTTCACCAAATGGGCAGGGCAGTGTGGTGAATG
CCAGGCCTGGAATACCCTGATTGAAACCGTGATAGATACCACCCCGACGGGCGGCAGCGGTGGCGGTTCGCGCAGCAGCA
ACTGGGCAGGAGAAATGGCCCAGGTAAAAACCCTCGCCGAGGTATCCACTGAAGAAATGCCCCGCCAGCCCAGCGGTTCG
TCGGAGCTGGACCGGGTATTGGGTGGTGGGCTGGTCAGCGGCTCAGTAGTCTTGATCGGTGGTGATCCGGGTATCGGCAA
ATCCACCATTCTGCTGCAGACCCTGTGCCGACTGGCGCAGAACATGCCCGCGCTGTATATCACCGGTGAAGAGTCCCAGC
AGCAGGTAGCGATGCGTGCCGACCGGCTTGGCCTGCCGAAGGACCAGCTCAAGGTCATGACTGAAACCTGCATTGAAAGC
ATCGTCGCCACTGCCCGGCGTGAGCAGCCCAAGGTGATGGTGGTGGACTCCATCCAGACCATCTTCACCGAGCAACTGCA
ATCAGCCCCCGGCGGTGTCGCCCAGGTACGGGAAAGCGCCGCGCTTCTGGTGCGTTTTGCCAAGCAGAGCGGTACCGCCA
TTTTCCTGGTTGGTCATGTGACCAAGGAGGGTTCGCTGGCCGGGCCGCGGGTACTCGAACATATGGTCGACACCGTGTTG
TATTTCGAAGGTGAGTCCGATGGCCGGCTGCGCATGCTGCGGGCGGTGAAGAACCGTTTTGGTGCGGTCAACGAGCTTGG
CGTATTCGCCATGACCGACAAGGGCCTCAAGGAAGTCGCCAACCCCTCGGCGATTTTCCTGTCACGTTATGACGCACCCA
TTCCCGGCAGTGTGGTGATGTCCACCTGGGAAGGGTCGAGGCCGATGCTGGTGGAAGTGCAGGCGCTGGTAGACACCAGC
CACCTGGGCAATCCCCGGCGGGTAACCCTGGGGTTGGATCAGAACCGTCTGGCTATGCTGCTGGCGGTACTGCATCGTCA
TGGAGGCGTGCCCACCTATGACCAGGACGTGTTCGTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCGGCCGATC
TGGCGCTGCTGGCCGCGGTGATCTCCAGCCTGCGCAACCGCCCGCTGCCGATGGACCTGATGGTGTTCGGCGAACTCGGT
CTGTCGGGCGAGATTCGCCCGGTACCCAGCGGTCAGGAGCGGCTGAAGGAAGCCGCCAAGCATGGCTTTACCCGCGCCAT
CGTACCCAAGGCCAACGCGCCCAAGGAATCACCCAAGGGCATGCAGGTAGTGCCGGTGACCCGGCTGGATGAAGCCCTGG
GCATGCTGTTCGAGTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(81-224)

Subunit ChlI of Mg-chelatase (ChlI)

(352-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

99.563

0.485
  radA Streptococcus pneumoniae Rx1

46.507

100

0.465
  radA Streptococcus pneumoniae D39

46.507

100

0.465
  radA Streptococcus pneumoniae R6

46.507

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.507

100

0.465
  radA Streptococcus mitis NCTC 12261

46.288

100

0.463
  radA Streptococcus mitis SK321

46.288

100

0.463