Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   R8566_RS09430 Genome accession   NZ_AP026920
Coordinates   1832728..1833438 (+) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A0H2URH4
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1827728..1838438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS09415 (PC0014_18860) - 1828269..1828517 (-) 249 WP_317642037.1 YneF family protein -
  R8566_RS09420 (PC0014_18870) treC 1828773..1830398 (-) 1626 WP_000171205.1 alpha,alpha-phosphotrehalase -
  R8566_RS09425 (PC0014_18880) treP 1830576..1832543 (-) 1968 WP_000514354.1 PTS system trehalose-specific EIIBC component -
  R8566_RS09430 (PC0014_18890) treR 1832728..1833438 (+) 711 WP_000760673.1 trehalose operon repressor Regulator
  R8566_RS09435 - 1833635..1834793 (+) 1159 Protein_1863 transposase -
  R8566_RS09440 (PC0014_18930) - 1834868..1835794 (-) 927 WP_001291294.1 ATP-binding cassette domain-containing protein -
  R8566_RS09445 (PC0014_18940) amiE 1835805..1836872 (-) 1068 WP_000159562.1 ABC transporter ATP-binding protein Regulator
  R8566_RS09450 (PC0014_18950) amiD 1836881..1837807 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=82103 R8566_RS09430 WP_000760673.1 1832728..1833438(+) (treR) [Streptococcus pneumoniae strain PZ900700014]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=82103 R8566_RS09430 WP_000760673.1 1832728..1833438(+) (treR) [Streptococcus pneumoniae strain PZ900700014]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCGCTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593

Multiple sequence alignment