Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R5030_RS19015 Genome accession   NZ_CP137493
Coordinates   4048785..4049114 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA1346     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4043785..4054114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5030_RS19000 (R5030_19000) - 4044514..4045458 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  R5030_RS19005 (R5030_19005) - 4045559..4046584 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  R5030_RS19010 (R5030_19010) - 4046597..4048594 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  R5030_RS19015 (R5030_19015) comEA/comE1 4048785..4049114 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  R5030_RS19025 (R5030_19025) - 4049331..4050527 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  R5030_RS19030 (R5030_19030) uvrB 4050715..4052727 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=820996 R5030_RS19015 WP_003091430.1 4048785..4049114(+) (comEA/comE1) [Pseudomonas aeruginosa strain HPA1346]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=820996 R5030_RS19015 WP_003091430.1 4048785..4049114(+) (comEA/comE1) [Pseudomonas aeruginosa strain HPA1346]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385