Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   R5030_RS09785 Genome accession   NZ_CP137493
Coordinates   2081351..2082376 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain HPA1346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2076351..2087376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5030_RS09760 (R5030_09760) - 2076541..2076858 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  R5030_RS09765 (R5030_09765) trkA 2077006..2078379 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  R5030_RS09770 (R5030_09770) rsmB 2078406..2079710 (-) 1305 WP_023092224.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  R5030_RS09775 (R5030_09775) fmt 2079707..2080651 (-) 945 WP_031756537.1 methionyl-tRNA formyltransferase -
  R5030_RS09780 (R5030_09780) def 2080706..2081212 (-) 507 WP_003107059.1 peptide deformylase -
  R5030_RS09785 (R5030_09785) tsaP 2081351..2082376 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  R5030_RS09790 (R5030_09790) dprA 2082511..2083599 (+) 1089 WP_033989019.1 DNA-processing protein DprA Machinery gene
  R5030_RS09795 (R5030_09795) - 2083640..2084197 (+) 558 WP_003097300.1 L-threonylcarbamoyladenylate synthase -
  R5030_RS09800 (R5030_09800) - 2084207..2085184 (-) 978 WP_033938270.1 NADPH:quinone reductase -
  R5030_RS09805 (R5030_09805) hemF 2085375..2086292 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  R5030_RS09810 (R5030_09810) aroE 2086350..2087174 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=820973 R5030_RS09785 WP_003097294.1 2081351..2082376(+) (tsaP) [Pseudomonas aeruginosa strain HPA1346]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=820973 R5030_RS09785 WP_003097294.1 2081351..2082376(+) (tsaP) [Pseudomonas aeruginosa strain HPA1346]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393