Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R5018_RS27195 Genome accession   NZ_CP137491
Coordinates   5754520..5754849 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA1406     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5749520..5759849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5018_RS27180 (R5018_27180) uvrB 5750907..5752919 (-) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene
  R5018_RS27185 (R5018_27185) - 5753107..5754303 (+) 1197 WP_003091428.1 amino acid aminotransferase -
  R5018_RS27195 (R5018_27195) comEA/comE1 5754520..5754849 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  R5018_RS27200 (R5018_27200) - 5755040..5757037 (-) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  R5018_RS27205 (R5018_27205) - 5757050..5758075 (-) 1026 WP_023093916.1 MraY family glycosyltransferase -
  R5018_RS27210 (R5018_27210) - 5758176..5759117 (-) 942 WP_099319968.1 NAD-dependent epimerase/dehydratase family protein -
  R5018_RS27215 (R5018_27215) - 5759117..5759461 (-) 345 WP_235207702.1 hypothetical protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=820920 R5018_RS27195 WP_003091430.1 5754520..5754849(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA1406]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=820920 R5018_RS27195 WP_003091430.1 5754520..5754849(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA1406]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385