Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   R8566_RS06040 Genome accession   NZ_AP026920
Coordinates   1197904..1199586 (-) Length   560 a.a.
NCBI ID   WP_317642023.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1192904..1204586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS06010 - 1193057..1193860 (-) 804 Protein_1190 IS5 family transposase -
  R8566_RS06015 (PC0014_11940) - 1193868..1194170 (-) 303 WP_000590566.1 PTS sugar transporter subunit IIB -
  R8566_RS06020 (PC0014_11950) - 1194208..1194684 (-) 477 WP_000242208.1 PTS sugar transporter subunit IIA -
  R8566_RS06025 (PC0014_11960) - 1194864..1195196 (+) 333 WP_000693379.1 hypothetical protein -
  R8566_RS06030 (PC0014_11970) lepA 1195277..1197100 (-) 1824 WP_001047222.1 translation elongation factor 4 -
  R8566_RS06035 (PC0014_11980) - 1197179..1197907 (-) 729 WP_000133343.1 metallophosphoesterase family protein -
  R8566_RS06040 (PC0014_11990) recN 1197904..1199586 (-) 1683 WP_317642023.1 DNA repair protein RecN Machinery gene
  R8566_RS06045 (PC0014_12000) - 1199593..1200024 (-) 432 WP_001034412.1 arginine repressor -
  R8566_RS06050 (PC0014_12010) - 1200017..1200832 (-) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  R8566_RS06055 (PC0014_12020) - 1200825..1201700 (-) 876 WP_000743818.1 polyprenyl synthetase family protein -
  R8566_RS06060 (PC0014_12030) - 1201697..1201909 (-) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  R8566_RS06065 (PC0014_12040) xseA 1201887..1203227 (-) 1341 WP_000417470.1 exodeoxyribonuclease VII large subunit -
  R8566_RS06070 (PC0014_12050) udk 1203354..1203992 (-) 639 WP_001181378.1 uridine kinase -
  R8566_RS06075 (PC0014_12060) - 1204100..1204402 (-) 303 WP_000985089.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63445.91 Da        Isoelectric Point: 4.6065

>NTDB_id=82077 R8566_RS06040 WP_317642023.1 1197904..1199586(-) (recN) [Streptococcus pneumoniae strain PZ900700014]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QYGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREKQGEIR

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=82077 R8566_RS06040 WP_317642023.1 1197904..1199586(-) (recN) [Streptococcus pneumoniae strain PZ900700014]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAGTTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGTATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACAGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAACAGGGAGAAATAAGA
TGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.436

Multiple sequence alignment