Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   R8566_RS05890 Genome accession   NZ_AP026920
Coordinates   1168274..1168738 (-) Length   154 a.a.
NCBI ID   WP_001135786.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1163274..1173738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS05870 (PC0014_11660) - 1164225..1165193 (-) 969 WP_000105361.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  R8566_RS05875 (PC0014_11670) pdrM 1165347..1166708 (-) 1362 WP_000278537.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  R8566_RS05880 (PC0014_11680) - 1166719..1166979 (-) 261 WP_001105925.1 hypothetical protein -
  R8566_RS05885 (PC0014_11690) - 1166993..1168261 (-) 1269 WP_317642022.1 dihydroorotase -
  R8566_RS05890 (PC0014_11700) mutX 1168274..1168738 (-) 465 WP_001135786.1 8-oxo-dGTP diphosphatase Machinery gene
  R8566_RS05895 (PC0014_11710) - 1168748..1169401 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  R8566_RS05900 (PC0014_11720) - 1169539..1170141 (-) 603 WP_001811694.1 hypothetical protein -
  R8566_RS05905 (PC0014_11730) - 1170199..1170912 (-) 714 WP_000499438.1 YjjG family noncanonical pyrimidine nucleotidase -
  R8566_RS05910 (PC0014_11740) - 1171320..1171532 (-) 213 Protein_1170 PTS mannose family transporter subunit IIA -
  R8566_RS05915 - 1171532..1171606 (-) 75 Protein_1171 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17811.22 Da        Isoelectric Point: 4.3273

>NTDB_id=82075 R8566_RS05890 WP_001135786.1 1168274..1168738(-) (mutX) [Streptococcus pneumoniae strain PZ900700014]
MPQLATICYIDNGKELLMLHRNKKPNDVHKGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=82075 R8566_RS05890 WP_001135786.1 1168274..1168738(-) (mutX) [Streptococcus pneumoniae strain PZ900700014]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATAAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981

Multiple sequence alignment