Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8566_RS05845 Genome accession   NZ_AP026920
Coordinates   1158011..1159081 (+) Length   356 a.a.
NCBI ID   WP_000817885.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1153011..1164081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS05830 (PC0014_11580) ylqF 1154244..1155095 (+) 852 WP_000201317.1 ribosome biogenesis GTPase YlqF -
  R8566_RS05835 (PC0014_11590) - 1155082..1155861 (+) 780 WP_000201121.1 ribonuclease HII -
  R8566_RS05840 (PC0014_11600) - 1155877..1157427 (+) 1551 WP_000392546.1 ClC family H(+)/Cl(-) exchange transporter -
  R8566_RS05845 (PC0014_11610) xerS 1158011..1159081 (+) 1071 WP_000817885.1 tyrosine recombinase XerS Machinery gene
  R8566_RS05850 (PC0014_11620) - 1159154..1160143 (-) 990 WP_000873987.1 lipoate--protein ligase -
  R8566_RS05855 (PC0014_11630) lpdA 1160207..1161910 (-) 1704 WP_001162941.1 dihydrolipoyl dehydrogenase -
  R8566_RS05860 (PC0014_11640) - 1161956..1162999 (-) 1044 WP_000752698.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41170.23 Da        Isoelectric Point: 9.6949

>NTDB_id=82074 R8566_RS05845 WP_000817885.1 1158011..1159081(+) (xerS) [Streptococcus pneumoniae strain PZ900700014]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVINVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=82074 R8566_RS05845 WP_000817885.1 1158011..1159081(+) (xerS) [Streptococcus pneumoniae strain PZ900700014]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTAATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTACGTGTAACACCCCATAAACTGCGCCATACGCTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCCAGCACACAAGTCACTGACCTCTATACCCATATTGTTAATGA
TGAACAAAAGAATGCTCTAGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.719

100

0.997

Multiple sequence alignment