Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   R5028_RS20130 Genome accession   NZ_CP137486
Coordinates   4281627..4281992 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain HPA2660     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4276627..4286992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5028_RS20115 (R5028_20115) pilK 4277971..4278846 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  R5028_RS20120 (R5028_20120) pilJ 4278907..4280955 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  R5028_RS20125 (R5028_20125) - 4281040..4281576 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  R5028_RS20130 (R5028_20130) pilH 4281627..4281992 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  R5028_RS20135 (R5028_20135) pilG 4282039..4282446 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  R5028_RS20140 (R5028_20140) gshB 4282701..4283654 (+) 954 WP_003100943.1 glutathione synthase -
  R5028_RS20145 (R5028_20145) - 4283801..4284694 (+) 894 WP_003162015.1 energy transducer TonB -
  R5028_RS20150 (R5028_20150) - 4284743..4285312 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  R5028_RS20155 (R5028_20155) ruvX 4285312..4285746 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  R5028_RS20160 (R5028_20160) pyrR 4285858..4286370 (+) 513 WP_023097137.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=820575 R5028_RS20130 WP_003084587.1 4281627..4281992(-) (pilH) [Pseudomonas aeruginosa strain HPA2660]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=820575 R5028_RS20130 WP_003084587.1 4281627..4281992(-) (pilH) [Pseudomonas aeruginosa strain HPA2660]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364