Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   R5028_RS12660 Genome accession   NZ_CP137486
Coordinates   2712483..2712812 (-) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain HPA2660     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2707483..2717812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5028_RS12645 (R5028_12645) uvrB 2708870..2710882 (-) 2013 WP_034069277.1 excinuclease ABC subunit UvrB Machinery gene
  R5028_RS12650 (R5028_12650) - 2711070..2712266 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  R5028_RS12660 (R5028_12660) comEA/comE1 2712483..2712812 (-) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  R5028_RS12665 (R5028_12665) - 2713003..2715000 (-) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  R5028_RS12670 (R5028_12670) - 2715013..2716038 (-) 1026 WP_023093916.1 MraY family glycosyltransferase -
  R5028_RS12675 (R5028_12675) - 2716139..2717080 (-) 942 WP_099319968.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=820559 R5028_RS12660 WP_023109812.1 2712483..2712812(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA2660]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=820559 R5028_RS12660 WP_023109812.1 2712483..2712812(-) (comEA/comE1) [Pseudomonas aeruginosa strain HPA2660]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385