Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   R8566_RS02920 Genome accession   NZ_AP026920
Coordinates   574211..574477 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700014     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 569211..579477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8566_RS02900 (PC0014_05780) - 569425..569934 (+) 510 WP_000584667.1 N-acetyltransferase -
  R8566_RS02905 (PC0014_05790) pheT 570011..572413 (+) 2403 WP_000909146.1 phenylalanine--tRNA ligase subunit beta -
  R8566_RS02910 (PC0014_05800) - 572481..573482 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  R8566_RS02915 (PC0014_05810) - 573638..574126 (+) 489 Protein_575 transposase -
  R8566_RS02920 (PC0014_05820) HI0659 574211..574477 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  R8566_RS02925 (PC0014_05830) metE 574738..576987 (+) 2250 WP_000108268.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  R8566_RS02930 (PC0014_05840) metF 577051..577917 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  R8566_RS11480 - 578099..578368 (-) 270 WP_001811622.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=82053 R8566_RS02920 WP_001811621.1 574211..574477(+) (HI0659) [Streptococcus pneumoniae strain PZ900700014]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=82053 R8566_RS02920 WP_001811621.1 574211..574477(+) (HI0659) [Streptococcus pneumoniae strain PZ900700014]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment